Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QML74_RS00810 Genome accession   NZ_OX346404
Coordinates   152998..154044 (+) Length   348 a.a.
NCBI ID   WP_047341284.1    Uniprot ID   -
Organism   Enterococcus cecorum isolate CIRMBP-1281     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 147998..159044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML74_RS00790 (CIRMBP1281_00159) - 148459..149748 (+) 1290 WP_047338602.1 pitrilysin family protein -
  QML74_RS00795 (CIRMBP1281_00160) - 149935..150873 (+) 939 WP_047333979.1 helix-turn-helix domain-containing protein -
  QML74_RS00800 (CIRMBP1281_00161) pgsA 150984..151562 (+) 579 WP_047341289.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QML74_RS00805 (CIRMBP1281_00162) cinA 151627..152874 (+) 1248 WP_047341285.1 competence/damage-inducible protein A Machinery gene
  QML74_RS00810 (CIRMBP1281_00163) recA 152998..154044 (+) 1047 WP_047341284.1 recombinase RecA Machinery gene
  QML74_RS00815 (CIRMBP1281_00164) rny 154263..155822 (+) 1560 WP_047341283.1 ribonuclease Y -
  QML74_RS00820 (CIRMBP1281_00165) - 156040..156261 (+) 222 WP_016250396.1 helix-turn-helix transcriptional regulator -
  QML74_RS00825 (CIRMBP1281_00166) - 156248..157009 (+) 762 WP_016250395.1 DUF3169 family protein -
  QML74_RS00830 (CIRMBP1281_00167) - 157038..157937 (+) 900 WP_016250394.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37455.64 Da        Isoelectric Point: 4.8258

>NTDB_id=1155022 QML74_RS00810 WP_047341284.1 152998..154044(+) (recA) [Enterococcus cecorum isolate CIRMBP-1281]
MADDRKTALDAALKKIEKNFGKGSIMKLGEKADQQISTVPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKQGGTAAFIDAEHALDPAYAKKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGD
THVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRSEQLKQGSDIVGNR
TKIKVVKNKVAPPFKVAEIDIMYGEGISQEGELLDMAVNVDLVDKSGAWYSYNGERIGQGRENVKNYMKDHPEMVSELLV
KVRDAYGIGDGTTIEATEETEQETLDLE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1155022 QML74_RS00810 WP_047341284.1 152998..154044(+) (recA) [Enterococcus cecorum isolate CIRMBP-1281]
ATGGCCGATGATCGTAAAACAGCCTTAGATGCTGCATTGAAAAAAATAGAAAAAAACTTTGGTAAAGGCTCTATCATGAA
GCTTGGTGAAAAAGCCGACCAACAAATCTCCACCGTACCAAGTGGCTCGCTTGCATTAGATGTCGCTTTAGGAGTAGGGG
GTTATCCAAGAGGACGAATTATTGAAGTATACGGCCCAGAAAGTTCTGGTAAAACTACGGTTGCTTTACATGCGATTGCC
GAAGTTCAAAAACAAGGCGGAACTGCAGCCTTTATCGATGCCGAACACGCTTTAGATCCAGCCTATGCCAAAAAGCTAGG
CGTGAATATTGACGAATTACTTTTATCACAGCCAGATACCGGTGAACAAGGTCTAGAGATTGCCGATGCCCTTGTTTCTA
GTGGCGCGGTCGATATTATTGTCATTGACTCAGTTGCCGCTTTAGTGCCACGTGCCGAAATCGATGGTGAAATGGGGGAT
ACACACGTTGGGTTACAAGCCCGTTTAATGTCTCAAGCCCTACGTAAGTTATCTGGTACGATTAACAAGACGAAGACTAT
TGCGATTTTTATCAACCAAATCCGTGAAAAAGTCGGTGTGATGTTTGGTAATCCAGAAACTACACCTGGTGGACGTGCCT
TGAAGTTCTATGCGACCGTCCGTTTAGAAGTGCGTCGTTCTGAACAATTAAAACAAGGTAGCGATATTGTCGGTAACCGT
ACCAAGATTAAAGTCGTGAAAAACAAAGTGGCGCCACCATTTAAAGTCGCTGAAATTGACATCATGTATGGCGAAGGAAT
TTCTCAAGAAGGGGAATTGCTAGATATGGCGGTCAATGTTGATTTAGTCGATAAGAGTGGAGCATGGTATTCGTACAATG
GTGAGCGAATTGGACAAGGACGCGAAAATGTCAAAAACTATATGAAAGATCACCCAGAGATGGTCAGTGAGCTTTTAGTC
AAAGTTCGTGATGCCTATGGTATTGGTGATGGTACGACCATTGAAGCGACAGAAGAAACCGAACAAGAAACATTAGATTT
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.098

94.253

0.764
  recA Bacillus subtilis subsp. subtilis str. 168

78.462

93.391

0.733
  recA Streptococcus pyogenes NZ131

68.347

100

0.701
  recA Streptococcus mitis SK321

69.855

99.138

0.693
  recA Streptococcus mitis NCTC 12261

69.164

99.713

0.69
  recA Streptococcus pneumoniae D39

69.275

99.138

0.687
  recA Streptococcus pneumoniae Rx1

69.275

99.138

0.687
  recA Streptococcus pneumoniae R6

69.275

99.138

0.687
  recA Streptococcus pneumoniae TIGR4

69.275

99.138

0.687
  recA Streptococcus mutans UA159

67.908

100

0.681
  recA Lactococcus lactis subsp. cremoris KW2

69.552

96.264

0.67
  recA Neisseria gonorrhoeae strain FA1090

61.449

99.138

0.609
  recA Neisseria gonorrhoeae MS11

61.449

99.138

0.609
  recA Neisseria gonorrhoeae MS11

61.449

99.138

0.609
  recA Ralstonia pseudosolanacearum GMI1000

64.329

94.253

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.329

94.253

0.606
  recA Acinetobacter baumannii D1279779

60.819

98.276

0.598
  recA Glaesserella parasuis strain SC1401

59.538

99.425

0.592
  recA Acinetobacter baylyi ADP1

60.058

98.563

0.592
  recA Vibrio cholerae strain A1552

63.272

93.103

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.272

93.103

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.31

94.54

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.606

94.828

0.575
  recA Pseudomonas stutzeri DSM 10701

61.3

92.816

0.569
  recA Helicobacter pylori 26695

59.816

93.678

0.56
  recA Helicobacter pylori strain NCTC11637

59.816

93.678

0.56

Multiple sequence alignment