Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACNMOQ_RS08125 Genome accession   NZ_OX344834
Coordinates   1644500..1645570 (-) Length   356 a.a.
NCBI ID   WP_016998657.1    Uniprot ID   -
Organism   Mammaliicoccus lentus isolate M_lentus_chr     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1639500..1650570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNMOQ_RS08105 - 1639741..1639959 (+) 219 WP_416349663.1 hypothetical protein -
  ACNMOQ_RS08110 - 1640657..1641670 (+) 1014 WP_416349664.1 ornithine cyclodeaminase family protein -
  ACNMOQ_RS08115 - 1641689..1642651 (+) 963 WP_416349665.1 threonine ammonia-lyase -
  ACNMOQ_RS08120 rny 1642737..1644296 (-) 1560 WP_016998658.1 ribonuclease Y -
  ACNMOQ_RS08125 recA 1644500..1645570 (-) 1071 WP_016998657.1 recombinase RecA Machinery gene
  ACNMOQ_RS08130 - 1645732..1646889 (-) 1158 WP_416349666.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  ACNMOQ_RS08135 pgsA 1647081..1647662 (-) 582 WP_135031909.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACNMOQ_RS08140 - 1647727..1648122 (-) 396 WP_016998654.1 helix-turn-helix domain-containing protein -
  ACNMOQ_RS08145 - 1648144..1648959 (-) 816 WP_016998653.1 YmfK family protein -
  ACNMOQ_RS08150 ymfI 1648976..1649680 (-) 705 WP_416349667.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38862.11 Da        Isoelectric Point: 5.3969

>NTDB_id=1154877 ACNMOQ_RS08125 WP_016998657.1 1644500..1645570(-) (recA) [Mammaliicoccus lentus isolate M_lentus_chr]
MNEQRQKALDTVIKNMEKSFGKGAVMKLGDNTSREVSAVSSGSITLDKALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EAQRQGGVAAFIDAEHALDPVYAKNLGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSNTTAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQEVVGNR
TKIKVVKNKVAPPFRVAEVDIMYGEGISREGELIDLAVEYEIVDKSGAWYSYNGERMGQGKENVKTYLKENPAIIEEIDS
ILRNELGFNGKPKEEAKKDKKDKKEENPEQESLLDQ

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1154877 ACNMOQ_RS08125 WP_016998657.1 1644500..1645570(-) (recA) [Mammaliicoccus lentus isolate M_lentus_chr]
GTGAACGAACAACGTCAGAAAGCACTCGATACAGTAATTAAGAATATGGAAAAATCCTTTGGTAAAGGGGCAGTTATGAA
ACTTGGGGATAACACAAGTAGAGAAGTTTCAGCTGTGTCCAGTGGATCTATTACATTAGATAAAGCTTTAGGAGTAGGTG
GATATCCTAAAGGACGTATTATTGAAATATATGGACCAGAAAGTTCTGGTAAGACAACTGTTGCGCTTCATGCTATTGCA
GAAGCACAACGTCAAGGAGGCGTAGCTGCGTTTATCGATGCTGAGCATGCTTTAGACCCAGTTTATGCTAAGAATTTAGG
CGTAGATATAGATAACCTTTATTTATCACAACCTGACCACGGGGAACAAGGACTAGAGATTGCTGAAGCATTCGTAAGAA
GTGGTGCTGTTGATATTATTATCGTTGACTCTGTAGCTGCTCTTACACCTAAGGCTGAAATTGAAGGCGAAATGGGCGAT
ACACACGTTGGTTTACAAGCTCGTCTAATGAGCCAAGCTTTACGTAAATTATCAGCTGCAATATCTAAATCAAATACAAC
TGCAATATTTATCAACCAAATCCGTGAAAAAGTAGGCGTTATGTTCGGTAACCCTGAAGTTACACCTGGTGGTCGTGCAC
TTAAATTCTATAGTTCTGTTCGTTTAGAAGTGCGTAGAGCCGAACAATTGAAACAAGGTCAAGAAGTTGTAGGTAACCGT
ACTAAGATTAAAGTTGTTAAGAACAAAGTGGCACCACCATTTAGAGTAGCAGAAGTTGATATTATGTACGGTGAAGGTAT
TTCACGTGAAGGCGAATTAATCGATTTAGCTGTTGAATATGAAATCGTCGATAAATCAGGTGCTTGGTATTCTTATAATG
GCGAAAGAATGGGACAAGGTAAAGAAAATGTTAAAACATACTTGAAAGAAAACCCAGCTATCATTGAAGAAATTGATTCT
ATTCTTAGAAATGAATTAGGTTTTAATGGTAAACCTAAAGAAGAAGCTAAGAAAGATAAGAAAGATAAAAAAGAAGAAAA
TCCTGAGCAAGAATCATTGCTAGATCAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.692

91.292

0.691
  recA Latilactobacillus sakei subsp. sakei 23K

69.369

93.539

0.649
  recA Streptococcus pneumoniae R6

63.611

100

0.643
  recA Streptococcus pneumoniae Rx1

63.611

100

0.643
  recA Streptococcus pneumoniae D39

63.611

100

0.643
  recA Streptococcus pneumoniae TIGR4

63.611

100

0.643
  recA Streptococcus mutans UA159

62.849

100

0.632
  recA Streptococcus mitis NCTC 12261

64.912

96.067

0.624
  recA Streptococcus pyogenes NZ131

67.069

92.978

0.624
  recA Streptococcus mitis SK321

64.809

95.787

0.621
  recA Acinetobacter baylyi ADP1

62.751

98.034

0.615
  recA Acinetobacter baumannii D1279779

65.165

93.539

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.955

92.978

0.604
  recA Neisseria gonorrhoeae MS11

60.969

98.596

0.601
  recA Neisseria gonorrhoeae MS11

60.969

98.596

0.601
  recA Neisseria gonorrhoeae strain FA1090

60.969

98.596

0.601
  recA Lactococcus lactis subsp. cremoris KW2

64.742

92.416

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.031

91.573

0.596
  recA Vibrio cholerae strain A1552

65.031

91.573

0.596
  recA Glaesserella parasuis strain SC1401

60.458

98.034

0.593
  recA Helicobacter pylori strain NCTC11637

62.727

92.697

0.581
  recA Helicobacter pylori 26695

62.424

92.697

0.579
  recA Pseudomonas stutzeri DSM 10701

62.883

91.573

0.576
  recA Ralstonia pseudosolanacearum GMI1000

64.65

88.202

0.57
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

92.978

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.568

89.045

0.539

Multiple sequence alignment