Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LQ983_RS05655 Genome accession   NZ_OV100759
Coordinates   1178842..1179894 (+) Length   350 a.a.
NCBI ID   WP_230621926.1    Uniprot ID   -
Organism   Aggregatibacter sp. Marseille-P9115     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1173842..1184894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ983_RS05635 - 1174155..1174829 (+) 675 WP_230621924.1 phosphoglycolate phosphatase -
  LQ983_RS05640 trpS 1174951..1175955 (+) 1005 WP_006719860.1 tryptophan--tRNA ligase -
  LQ983_RS05645 - 1176090..1176707 (-) 618 WP_048749193.1 MarC family protein -
  LQ983_RS05650 - 1176786..1178711 (+) 1926 WP_230621925.1 ABC transporter ATP-binding protein -
  LQ983_RS05655 recA 1178842..1179894 (+) 1053 WP_230621926.1 recombinase RecA Machinery gene
  LQ983_RS05660 recX 1179976..1180434 (+) 459 WP_230621927.1 recombination regulator RecX -
  LQ983_RS05665 - 1180510..1180899 (+) 390 WP_230621928.1 RidA family protein -
  LQ983_RS05670 lysA 1180971..1182221 (-) 1251 WP_230621929.1 diaminopimelate decarboxylase -
  LQ983_RS05675 - 1182240..1182359 (-) 120 WP_230621930.1 lipoprotein -
  LQ983_RS05680 cyaY 1182481..1182789 (+) 309 WP_230621931.1 iron donor protein CyaY -
  LQ983_RS05685 recQ 1182789..1184678 (+) 1890 WP_230621932.1 DNA helicase RecQ -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37696.18 Da        Isoelectric Point: 4.7664

>NTDB_id=1151821 LQ983_RS05655 WP_230621926.1 1178842..1179894(+) (recA) [Aggregatibacter sp. Marseille-P9115]
MATQEEKQKALEAALGQIEKQFGKGAIMKLGDSQKLDIEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAEAQKAGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDM
GDSHVGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKEGDEVIG
NETRVKVVKNKVAPPFRQVDFQILYGEGISKESELIDLGVKHKLISKAGAWYAYENEKIGQGKTNAMKWLKENPEQAKLI
ESTLRDELLAHPETAITADVEDEAGDADFE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1151821 LQ983_RS05655 WP_230621926.1 1178842..1179894(+) (recA) [Aggregatibacter sp. Marseille-P9115]
ATGGCAACTCAAGAAGAAAAACAAAAAGCGCTCGAAGCCGCGTTAGGTCAAATCGAAAAACAATTTGGTAAAGGCGCCAT
CATGAAATTAGGCGACAGCCAAAAATTGGATATTGAAGCGATTTCCACCGGTTCCTTCGGTCTTGACTTAGCGTTAGGGA
TCGGCGGTTTGCCAATGGGACGTATCGTTGAAATTTTTGGCCCGGAATCTTCTGGTAAAACCACTTTGACGCTTTCTGTG
ATCGCTGAAGCGCAAAAAGCGGGTAAAACCTGTGCCTTTATCGATGCGGAACATGCCTTAGACCCAATTTATGCCTCTAA
ACTGGGCGTGGATGTGAAAGAGTTGTTGGTTTCTCAACCGGATAACGGTGAGCAAGCGTTAGAAATCTGTGATGCCTTAG
TGCGTTCCGGCGCGGTGGATGTGATTATTGTTGACTCCGTTGCAGCTTTAACGCCGAAAGCAGAAATTGAAGGCGATATG
GGTGATTCTCATGTGGGCTTGCAAGCGCGTCTTATGTCTCAAGCATTGCGTAAATTGACCGGACAAATTAAAAATGCCAA
CTGTTTAGTGATTTTCATCAACCAAATCCGTATGAAGATCGGCGTGATGTTTGGTAACCCGGAAACCACTACCGGTGGTA
ATGCACTGAAATTCTATGCCTCTGTGCGTTTGGATATTCGCCGTGTCGGTTCAATTAAAGAAGGCGATGAGGTCATTGGT
AATGAAACGCGCGTGAAAGTGGTGAAAAACAAAGTCGCACCGCCATTCCGTCAAGTGGATTTCCAAATTCTGTACGGCGA
AGGGATTTCTAAAGAAAGCGAATTGATTGATCTTGGTGTAAAACACAAGCTCATCAGTAAGGCCGGCGCATGGTATGCTT
ATGAAAACGAGAAAATCGGTCAGGGCAAAACCAATGCAATGAAATGGTTAAAAGAGAATCCAGAACAAGCGAAATTAATT
GAAAGCACCTTACGTGATGAGTTGTTAGCGCATCCAGAAACGGCCATTACCGCCGACGTTGAAGACGAAGCCGGTGACGC
TGATTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

75.145

98.857

0.743
  recA Pseudomonas stutzeri DSM 10701

74.203

98.571

0.731
  recA Vibrio cholerae strain A1552

73.623

98.571

0.726
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.623

98.571

0.726
  recA Neisseria gonorrhoeae strain FA1090

72.141

97.429

0.703
  recA Neisseria gonorrhoeae MS11

72.141

97.429

0.703
  recA Neisseria gonorrhoeae MS11

72.141

97.429

0.703
  recA Acinetobacter baylyi ADP1

70.088

97.429

0.683
  recA Acinetobacter baumannii D1279779

69.322

96.857

0.671
  recA Ralstonia pseudosolanacearum GMI1000

72.188

91.429

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.846

92.857

0.611
  recA Helicobacter pylori 26695

63.473

95.429

0.606
  recA Helicobacter pylori strain NCTC11637

63.473

95.429

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.363

95.143

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

64.596

92

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.774

93.429

0.577
  recA Streptococcus mitis NCTC 12261

57.637

99.143

0.571
  recA Streptococcus pneumoniae Rx1

59.939

93.429

0.56
  recA Streptococcus pneumoniae TIGR4

59.939

93.429

0.56
  recA Streptococcus pneumoniae D39

59.939

93.429

0.56
  recA Streptococcus pneumoniae R6

59.939

93.429

0.56
  recA Streptococcus mitis SK321

60.185

92.571

0.557
  recA Streptococcus mutans UA159

59.692

92.857

0.554
  recA Streptococcus pyogenes NZ131

58.462

92.857

0.543
  recA Latilactobacillus sakei subsp. sakei 23K

60.645

88.571

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.099

92.571

0.529

Multiple sequence alignment