Detailed information NTG1150813

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: KKQ76_RS12330
• Genome accession: NZ_OU015321
• Coordinates: 2648498..2649496 (-)
• Length: 332 a.a.
• NCBI ID: WP_213197380.1
• Uniprot ID: -
• Organism: Cloacibacterium caeni isolate Isolate2
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	2612701..2651203	2648498..2649496	within	0

Gene organization within MGE regions

Location: 2612701..2651203

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KKQ76_RS12195	-	2612935..2614563 (-)	1629	WP_213197355.1	acyl-CoA carboxylase subunit beta	-
KKQ76_RS12200	-	2615004..2615903 (+)	900	WP_213197356.1	DMT family transporter	-
KKQ76_RS12205	-	2615919..2616998 (+)	1080	WP_213197357.1	PorV/PorQ family protein	-
KKQ76_RS12210	-	2617233..2618012 (+)	780	WP_213197358.1	hypothetical protein	-
KKQ76_RS12215	uvrC	2618184..2619974 (-)	1791	WP_213197359.1	excinuclease ABC subunit UvrC	-
KKQ76_RS12220	-	2620066..2620584 (-)	519	WP_213197360.1	TonB-dependent receptor plug domain-containing protein	-
KKQ76_RS12225	-	2620605..2623745 (-)	3141	WP_213197361.1	exodeoxyribonuclease V subunit beta	-
KKQ76_RS12230	groL	2623922..2625550 (-)	1629	WP_213197362.1	chaperonin GroEL	-
KKQ76_RS12235	groES	2625654..2625932 (-)	279	WP_069800539.1	co-chaperone GroES	-
KKQ76_RS12240	-	2626120..2628504 (-)	2385	WP_213197363.1	M1 family metallopeptidase	-
KKQ76_RS12245	-	2628617..2629192 (-)	576	WP_213197364.1	HupE/UreJ family protein	-
KKQ76_RS12250	-	2629257..2629757 (+)	501	WP_213197365.1	DUF6702 family protein	-
KKQ76_RS12255	-	2629714..2630334 (-)	621	WP_213197366.1	ACP phosphodiesterase	-
KKQ76_RS12260	radA	2630458..2631807 (-)	1350	WP_213197367.1	DNA repair protein RadA	Machinery gene
KKQ76_RS12265	-	2631914..2633521 (+)	1608	WP_213197368.1	CTP synthase	-
KKQ76_RS12270	yidC	2633668..2635473 (+)	1806	WP_213197369.1	membrane protein insertase YidC	-
KKQ76_RS12275	-	2635531..2636115 (-)	585	WP_213197370.1	ribonuclease HII	-
KKQ76_RS12280	-	2636250..2639252 (+)	3003	WP_213197371.1	SusC/RagA family TonB-linked outer membrane protein	-
KKQ76_RS12285	-	2639264..2640715 (+)	1452	WP_213197372.1	SusD/RagB family nutrient-binding outer membrane lipoprotein	-
KKQ76_RS12290	-	2640779..2641285 (+)	507	WP_213197373.1	hypothetical protein	-
KKQ76_RS12295	argS	2641367..2643145 (+)	1779	WP_213197374.1	arginine--tRNA ligase	-
KKQ76_RS12305	-	2644715..2645758 (+)	1044	WP_213197375.1	AMP-binding protein	-
KKQ76_RS12310	arfB	2645761..2646153 (+)	393	WP_213197376.1	alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB	-
KKQ76_RS12315	-	2646252..2646398 (+)	147	WP_213197377.1	hypothetical protein	-
KKQ76_RS12320	-	2646738..2647715 (+)	978	WP_213197378.1	deoxyhypusine synthase family protein	-
KKQ76_RS12325	-	2648051..2648365 (+)	315	WP_213197379.1	MGMT family protein	-
KKQ76_RS12330	recA	2648498..2649496 (-)	999	WP_213197380.1	recombinase RecA	Machinery gene
KKQ76_RS12335	-	2649661..2650230 (+)	570	WP_213197381.1	phosphoglycerate mutase family protein	-
KKQ76_RS12340	-	2650262..2650774 (-)	513	WP_213197382.1	DUF4252 domain-containing protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 35699.23 Da
• Isoelectric Point: 5.9015

>NTDB_id=1150813 KKQ76_RS12330 WP_213197380.1 2648498..2649496(-) (recA) [Cloacibacterium caeni isolate Isolate2]
MSSIDDKKKALALVLEKMDKTYGKGTVMKMGDSAVEEVEVIPSGSLGLDIALGVGGYPKGRVIEIYGPESSGKTTLTMHA
IAESQKAGGIAAFIDAEHAFDAVYAKKLGIDVENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGEM
GDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVVFGNPETTTGGNALKFYASVRIDIRRSGSPIKVGEDAV
GNRVKVKIVKNKVAPPFKNTEFDIMYGEGISKVGEILDLGVEFDIVKKSGSWFSYGDTKLGQGRDAVKELLKDNPELLEE
LAEKIKVAIKEK

Nucleotide

• Length: 999 bp

>NTDB_id=1150813 KKQ76_RS12330 WP_213197380.1 2648498..2649496(-) (recA) [Cloacibacterium caeni isolate Isolate2]
ATGAGCAGTATAGACGATAAGAAAAAAGCACTCGCATTAGTCCTCGAAAAAATGGATAAAACCTATGGAAAAGGTACCGT
TATGAAAATGGGAGACAGTGCAGTAGAAGAAGTAGAAGTAATTCCGAGTGGTTCGCTTGGTTTAGATATTGCTTTGGGAG
TTGGCGGTTATCCAAAAGGTAGAGTCATCGAAATTTATGGCCCTGAATCTTCTGGTAAAACCACACTTACCATGCACGCA
ATTGCAGAATCTCAAAAAGCGGGAGGAATTGCAGCTTTCATAGATGCAGAACACGCTTTTGATGCAGTTTACGCTAAAAA
ATTGGGAATTGATGTAGAAAATTTAATCATTTCTCAACCTGACAATGGTGAACAAGCATTAGAAATTGCAGATAATTTAA
TTCGTTCTGGAGCGATTGATATTGTGGTAATTGACTCTGTTGCAGCATTGACTCCAAAAGCAGAAATTGAAGGAGAAATG
GGCGATTCTAAAATGGGATTGCATGCAAGATTAATGTCTCAAGCTTTGAGAAAATTAACAGCAACGATTTCCAGAACAAA
ATGTACGGTGATTTTCATCAACCAATTAAGAGAAAAAATTGGCGTAGTATTCGGAAACCCTGAAACTACAACTGGTGGAA
ATGCACTAAAATTCTATGCTTCGGTAAGAATTGATATCAGAAGAAGTGGTTCACCAATAAAAGTAGGCGAAGATGCAGTA
GGAAACCGCGTGAAAGTAAAAATTGTGAAAAACAAAGTTGCTCCACCATTTAAAAATACAGAATTTGATATTATGTATGG
AGAAGGAATTTCTAAAGTTGGCGAAATTCTAGATTTGGGTGTAGAATTTGACATTGTTAAAAAATCTGGTTCTTGGTTTA
GCTATGGTGACACGAAACTGGGACAAGGTAGAGATGCCGTGAAAGAATTACTAAAAGATAATCCTGAACTTTTAGAAGAA
TTAGCTGAGAAAATAAAAGTGGCTATTAAAGAAAAATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	78.743	100	0.792
recA	Ralstonia pseudosolanacearum GMI1000	64.865	100	0.651
recA	Neisseria gonorrhoeae strain FA1090	65.635	97.289	0.639
recA	Neisseria gonorrhoeae MS11	65.635	97.289	0.639
recA	Neisseria gonorrhoeae MS11	65.635	97.289	0.639
recA	Helicobacter pylori 26695	63.636	99.398	0.633
recA	Helicobacter pylori strain NCTC11637	63.333	99.398	0.63
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.467	97.289	0.617
recA	Acinetobacter baumannii D1279779	63.354	96.988	0.614
recA	Bacillus subtilis subsp. subtilis str. 168	62.539	97.289	0.608
recA	Acinetobacter baylyi ADP1	62.733	96.988	0.608
recA	Glaesserella parasuis strain SC1401	62.112	96.988	0.602
recA	Vibrio cholerae O1 biovar El Tor strain E7946	60.559	96.988	0.587
recA	Vibrio cholerae strain A1552	60.559	96.988	0.587
recA	Lactococcus lactis subsp. cremoris KW2	59.327	98.494	0.584
recA	Streptococcus mitis NCTC 12261	59.692	97.892	0.584
recA	Streptococcus mitis SK321	59.692	97.892	0.584
recA	Pseudomonas stutzeri DSM 10701	60.248	96.988	0.584
recA	Latilactobacillus sakei subsp. sakei 23K	59.259	97.59	0.578
recA	Streptococcus pneumoniae D39	58.951	97.59	0.575
recA	Streptococcus pneumoniae TIGR4	58.951	97.59	0.575
recA	Streptococcus pneumoniae R6	58.951	97.59	0.575
recA	Streptococcus pneumoniae Rx1	58.951	97.59	0.575
recA	Streptococcus pyogenes NZ131	58.589	98.193	0.575
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	57.846	97.892	0.566
recA	Streptococcus mutans UA159	57.362	98.193	0.563