Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KKQ79_RS12870 Genome accession   NZ_OU015319
Coordinates   2769646..2770647 (-) Length   333 a.a.
NCBI ID   WP_213190478.1    Uniprot ID   -
Organism   Cloacibacterium caeni isolate Isolate1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2764646..2775647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKQ79_RS12850 - 2765380..2766426 (+) 1047 WP_213190474.1 AMP-binding protein -
  KKQ79_RS12855 arfB 2766532..2766924 (+) 393 WP_213190475.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  KKQ79_RS12860 - 2767635..2768612 (+) 978 WP_213190476.1 deoxyhypusine synthase family protein -
  KKQ79_RS12865 - 2769192..2769506 (+) 315 WP_213190477.1 MGMT family protein -
  KKQ79_RS12870 recA 2769646..2770647 (-) 1002 WP_213190478.1 recombinase RecA Machinery gene
  KKQ79_RS12875 - 2770812..2771381 (+) 570 WP_213190479.1 histidine phosphatase family protein -
  KKQ79_RS12880 - 2771413..2771925 (-) 513 WP_069800576.1 DUF4252 domain-containing protein -
  KKQ79_RS12885 - 2772002..2772568 (-) 567 WP_213190480.1 DUF4252 domain-containing protein -
  KKQ79_RS12890 - 2772581..2773219 (-) 639 WP_213190481.1 hypothetical protein -
  KKQ79_RS12895 - 2773231..2773740 (-) 510 WP_213190482.1 sigma-70 family RNA polymerase sigma factor -
  KKQ79_RS12900 - 2773867..2774436 (-) 570 WP_213190483.1 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35859.46 Da        Isoelectric Point: 6.3110

>NTDB_id=1150796 KKQ79_RS12870 WP_213190478.1 2769646..2770647(-) (recA) [Cloacibacterium caeni isolate Isolate1]
MSSIDDKKKALALVLEKMDKTYGKGTVMKMGDSAVEEVEVIPSGSLGLDIALGVGGYPKGRVIEIYGPESSGKTTLTMHA
IAESQKAGGIAAFIDAEHAFDAVYAKKLGIDVENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGEM
GDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRRSGSPIKVGEDAV
GNRVKVKIVKNKVAPPFKNTEFDIMYGEGISKVGEILDLGVEFDIVKKSGSWFSYGDTKLGQGRDAVKELLKDNPELLEE
LAEKIKVAIKEKK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1150796 KKQ79_RS12870 WP_213190478.1 2769646..2770647(-) (recA) [Cloacibacterium caeni isolate Isolate1]
ATGAGCAGTATAGACGATAAGAAAAAAGCACTCGCATTAGTCCTCGAAAAAATGGATAAAACCTACGGAAAAGGTACCGT
AATGAAAATGGGAGACAGTGCAGTAGAAGAAGTAGAAGTAATTCCGAGTGGTTCACTTGGTTTAGATATTGCTTTGGGAG
TTGGCGGTTATCCTAAAGGTAGAGTCATCGAAATTTACGGCCCTGAATCTTCTGGTAAAACCACGCTTACCATGCACGCA
ATTGCAGAATCTCAAAAAGCGGGAGGAATTGCAGCTTTTATAGATGCAGAACACGCTTTTGACGCTGTTTATGCAAAAAA
ACTAGGAATTGATGTAGAAAATTTAATTATTTCTCAACCAGATAATGGCGAACAAGCATTAGAAATTGCAGATAATTTAA
TTCGTTCTGGAGCGATTGACATCGTGGTAATCGACTCAGTTGCAGCTTTGACACCAAAAGCAGAAATTGAAGGAGAAATG
GGAGATTCTAAAATGGGATTGCATGCAAGATTAATGTCTCAAGCTTTGAGAAAATTAACAGCTACAATTTCTAGAACAAA
ATGTACGGTGATTTTCATCAACCAATTAAGAGAAAAAATTGGGGTAATGTTCGGAAATCCTGAAACAACTACTGGTGGAA
ATGCTTTGAAATTCTACGCTTCGGTAAGAATTGATATCAGAAGAAGTGGTTCACCAATAAAAGTAGGTGAAGATGCAGTA
GGAAACCGCGTGAAAGTAAAAATTGTGAAAAACAAAGTTGCTCCACCATTTAAAAATACAGAATTCGATATTATGTACGG
AGAAGGAATTTCTAAAGTTGGCGAAATTCTAGATCTGGGCGTTGAATTTGATATTGTTAAAAAATCTGGTTCTTGGTTCA
GCTATGGCGACACGAAACTGGGACAAGGTAGAGATGCCGTGAAAGAATTACTAAAAGACAATCCTGAACTTTTAGAAGAA
TTAGCTGAGAAAATAAAAGTGGCTATTAAAGAAAAGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.042

100

0.793
  recA Ralstonia pseudosolanacearum GMI1000

65.165

100

0.652
  recA Neisseria gonorrhoeae strain FA1090

65.944

96.997

0.64
  recA Neisseria gonorrhoeae MS11

65.944

96.997

0.64
  recA Neisseria gonorrhoeae MS11

65.944

96.997

0.64
  recA Helicobacter pylori 26695

63.939

99.099

0.634
  recA Helicobacter pylori strain NCTC11637

63.636

99.099

0.631
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.777

96.997

0.619
  recA Acinetobacter baumannii D1279779

63.665

96.697

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

62.848

96.997

0.61
  recA Acinetobacter baylyi ADP1

63.043

96.697

0.61
  recA Glaesserella parasuis strain SC1401

62.422

96.697

0.604
  recA Vibrio cholerae strain A1552

60.87

96.697

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.87

96.697

0.589
  recA Streptococcus mitis NCTC 12261

60

97.598

0.586
  recA Streptococcus mitis SK321

60

97.598

0.586
  recA Pseudomonas stutzeri DSM 10701

60.559

96.697

0.586
  recA Lactococcus lactis subsp. cremoris KW2

59.633

98.198

0.586
  recA Latilactobacillus sakei subsp. sakei 23K

59.568

97.297

0.58
  recA Streptococcus pyogenes NZ131

58.896

97.898

0.577
  recA Streptococcus pneumoniae D39

59.259

97.297

0.577
  recA Streptococcus pneumoniae R6

59.259

97.297

0.577
  recA Streptococcus pneumoniae TIGR4

59.259

97.297

0.577
  recA Streptococcus pneumoniae Rx1

59.259

97.297

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.154

97.598

0.568
  recA Streptococcus mutans UA159

57.669

97.898

0.565

Multiple sequence alignment