Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BTBSAS_RS06885 Genome accession   NZ_LT993737
Coordinates   1387249..1388301 (-) Length   350 a.a.
NCBI ID   WP_069119597.1    Uniprot ID   A0A1D2LR48
Organism   Brochothrix thermosphacta isolate CD 337     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1382249..1393301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTBSAS_RS06870 (BTCD_1391) hemA 1382383..1383675 (-) 1293 WP_069120069.1 glutamyl-tRNA reductase -
  BTBSAS_RS06875 (BTCD_1392) hemE 1383694..1384743 (-) 1050 WP_029091813.1 uroporphyrinogen decarboxylase -
  BTBSAS_RS06880 (BTCD_1394) rny 1385371..1386933 (-) 1563 WP_029091997.1 ribonuclease Y -
  BTBSAS_RS06885 (BTCD_1395) recA 1387249..1388301 (-) 1053 WP_069119597.1 recombinase RecA Machinery gene
  BTBSAS_RS06890 (BTCD_1396) - 1388436..1389692 (-) 1257 WP_069119596.1 competence/damage-inducible protein A -
  BTBSAS_RS06895 (BTCD_1398) pgsA 1389866..1390447 (-) 582 WP_029092000.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BTBSAS_RS06900 (BTCD_1399) - 1390546..1391418 (-) 873 WP_069119595.1 helix-turn-helix domain-containing protein -
  BTBSAS_RS06905 (BTCD_1400) yfmH 1392064..1393293 (-) 1230 WP_069119594.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37828.94 Da        Isoelectric Point: 4.8647

>NTDB_id=1150388 BTBSAS_RS06885 WP_069119597.1 1387249..1388301(-) (recA) [Brochothrix thermosphacta isolate CD 337]
MDNRQAALEQALKQIEKQFGKGSIMKLGEKTDTNIKTIPSGSLALDVALGVGGYPRGRVVEVYGPESSGKTTVALHAIAE
VQEQGGTAAFIDAEHALDPAYAKKLGVNIDELLLSQPDTGEQALEICEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGSINKSKTIALFINQIREKVGVMFGNPEITPGGRALKFYASVRLEVRRAEQLKQGTDIIGNKT
RIKVVKNKVAPPFRIAEVDIVYGEGISREGELVDMAAEEDIIIKSGSWYSYEGERIGQGRENAKQYLREHTDTRLEISGK
VRNAYGIGDDLPESAEVVEEAAVDTENVEK

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1150388 BTBSAS_RS06885 WP_069119597.1 1387249..1388301(-) (recA) [Brochothrix thermosphacta isolate CD 337]
TTGGATAATCGTCAAGCAGCCTTAGAACAGGCATTAAAACAAATTGAAAAGCAATTCGGTAAAGGTTCTATCATGAAATT
AGGTGAAAAAACTGATACCAATATAAAAACTATTCCAAGTGGCTCGTTGGCACTTGATGTGGCATTAGGTGTTGGTGGTT
ATCCTCGTGGACGTGTTGTTGAAGTATACGGTCCAGAAAGTTCAGGTAAAACAACTGTAGCATTACATGCAATTGCAGAA
GTTCAAGAACAAGGCGGAACAGCGGCGTTTATCGATGCAGAGCATGCACTTGATCCAGCTTATGCTAAAAAATTAGGCGT
TAATATTGATGAATTACTACTTTCTCAACCTGATACAGGTGAACAAGCACTTGAAATATGTGAAGCGTTAGTACGTTCAG
GAGCCGTTGATATCGTTGTTGTCGATTCAGTAGCTGCTTTGGTACCAAAAGCTGAAATTGAAGGCGAAATGGGAGACTCA
CACGTTGGTCTTCAAGCGCGTTTAATGTCACAAGCTTTACGTAAATTATCAGGTTCAATCAACAAATCGAAAACAATTGC
ACTGTTCATTAACCAAATTCGTGAAAAAGTCGGTGTTATGTTTGGTAACCCTGAAATTACACCAGGTGGTCGTGCATTGA
AATTTTATGCGTCAGTTCGTTTAGAAGTACGTCGTGCTGAACAACTAAAACAAGGTACTGATATTATCGGTAACAAAACA
CGTATTAAAGTTGTTAAAAATAAAGTAGCGCCACCTTTCCGTATTGCAGAAGTTGATATTGTATACGGAGAAGGAATTTC
ACGTGAAGGTGAATTGGTTGATATGGCAGCTGAAGAAGATATCATTATCAAAAGTGGTTCATGGTATTCTTATGAAGGCG
AACGAATTGGCCAAGGTCGTGAAAATGCAAAACAATATTTACGTGAACATACTGACACTCGTTTAGAAATTTCTGGAAAA
GTTCGTAATGCTTATGGTATTGGCGATGACTTACCAGAATCTGCTGAAGTAGTCGAAGAAGCGGCTGTTGATACGGAAAA
TGTTGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D2LR48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.03

94.286

0.783
  recA Latilactobacillus sakei subsp. sakei 23K

78.932

96.286

0.76
  recA Streptococcus pneumoniae D39

67.241

99.429

0.669
  recA Streptococcus pneumoniae R6

67.241

99.429

0.669
  recA Streptococcus pneumoniae TIGR4

67.241

99.429

0.669
  recA Streptococcus pneumoniae Rx1

67.241

99.429

0.669
  recA Streptococcus mitis SK321

66.193

100

0.666
  recA Streptococcus mitis NCTC 12261

66.193

100

0.666
  recA Streptococcus pyogenes NZ131

69.605

94

0.654
  recA Streptococcus mutans UA159

68.485

94.286

0.646
  recA Lactococcus lactis subsp. cremoris KW2

68.278

94.571

0.646
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.92

99.429

0.606
  recA Vibrio cholerae strain A1552

60.92

99.429

0.606
  recA Neisseria gonorrhoeae MS11

64.832

93.429

0.606
  recA Neisseria gonorrhoeae MS11

64.832

93.429

0.606
  recA Neisseria gonorrhoeae strain FA1090

64.832

93.429

0.606
  recA Ralstonia pseudosolanacearum GMI1000

65.815

89.429

0.589
  recA Glaesserella parasuis strain SC1401

63.665

92

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.08

93.429

0.58
  recA Acinetobacter baylyi ADP1

63.24

91.714

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

93.429

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

93.429

0.577
  recA Helicobacter pylori 26695

58.944

97.429

0.574
  recA Helicobacter pylori strain NCTC11637

58.944

97.429

0.574
  recA Pseudomonas stutzeri DSM 10701

62.305

91.714

0.571
  recA Acinetobacter baumannii D1279779

61.994

91.714

0.569

Multiple sequence alignment