Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C6H34_RS07125 Genome accession   NZ_LT963395
Coordinates   1483850..1484914 (+) Length   354 a.a.
NCBI ID   WP_002554688.1    Uniprot ID   A0AAJ4AXG1
Organism   Pseudomonas cerasi isolate PL963     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1478850..1489914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H34_RS07110 (PL963_01374) fdxA 1479618..1479941 (-) 324 WP_002554692.1 ferredoxin FdxA -
  C6H34_RS07115 (PL963_01375) mutS 1480201..1482768 (-) 2568 WP_161937152.1 DNA mismatch repair protein MutS -
  C6H34_RS30390 - 1482922..1483164 (+) 243 WP_157893895.1 damage-inducible protein CinA -
  C6H34_RS07120 (PL963_01376) - 1483241..1483756 (+) 516 WP_065349275.1 CinA family protein -
  C6H34_RS07125 (PL963_01377) recA 1483850..1484914 (+) 1065 WP_002554688.1 recombinase RecA Machinery gene
  C6H34_RS07130 (PL963_01378) recX 1484920..1485387 (+) 468 WP_065349276.1 recombination regulator RecX -
  C6H34_RS07135 (PL963_01379) - 1485401..1486513 (-) 1113 WP_065349277.1 TIGR00730 family Rossman fold protein -
  C6H34_RS07140 (PL963_01380) - 1486706..1487122 (-) 417 WP_003364781.1 quorum-sensing-regulated virulence factor family protein -
  C6H34_RS07145 (PL963_01381) - 1487377..1488087 (+) 711 WP_003433338.1 tRNA-uridine aminocarboxypropyltransferase -
  C6H34_RS07155 (PL963_01382) erdR 1488332..1488979 (+) 648 WP_003433336.1 response regulator transcription factor ErdR -
  C6H34_RS07160 (PL963_01383) - 1489061..1489426 (+) 366 WP_003364775.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37744.39 Da        Isoelectric Point: 5.8081

>NTDB_id=1148786 C6H34_RS07125 WP_002554688.1 1483850..1484914(+) (recA) [Pseudomonas cerasi isolate PL963]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGKANSAKFLADNPEICKALEK
QIRDKLLTPGVDTKAVGSREAVAADDMSEADVDI

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1148786 C6H34_RS07125 WP_002554688.1 1483850..1484914(+) (recA) [Pseudomonas cerasi isolate PL963]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAGCGTCAGTTCGGTAAAGGCGCCGTGATGCG
CATGGGCGATCATGATCGCCAGGCGATCCCTGCCATCTCCACCGGTTCGCTGGGTCTGGATATCGCACTCGGTATTGGCG
GTCTGCCGAAAGGCCGGATCGTGGAAATCTACGGTCCTGAGTCTTCCGGTAAAACCACACTGACGCTGTCGGTCATCGCT
CAGGCCCAGAAAATGGGCGCTACCTGTGCCTTTGTCGACGCCGAGCACGCACTGGATCCGGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAATGCCATCGACGTGATCGTGGTCGACTCCGTTGCTGCGCTGGTGCCTAAGGCAGAGATCGAAGGCGAAATGGGTGAT
ATGCACGTGGGTCTGCAGGCACGTCTGATGTCGCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAATTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTTGGCAGCCCGGAAACCACTACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTACGTCTGGACATCCGCCGTACAGGCGCGGTCAAGGAAGGTGATGAAGTTGTCGGCAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAATGGCGAAATCGTCGATCTGGCCGTTCTGCATGGTTTTGTCGAGAAGTCCGGCGCCTGGTACAGCTACCAGG
GCAGCAAGATCGGTCAGGGTAAGGCCAACTCGGCCAAGTTCCTGGCAGATAACCCGGAAATCTGCAAAGCGCTCGAGAAG
CAGATCCGCGACAAGTTGCTGACCCCTGGCGTCGATACCAAGGCTGTCGGCTCACGTGAAGCAGTGGCTGCCGATGATAT
GTCTGAAGCAGATGTCGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

86.648

99.435

0.862
  recA Acinetobacter baylyi ADP1

73.729

100

0.737
  recA Acinetobacter baumannii D1279779

73.011

99.435

0.726
  recA Vibrio cholerae strain A1552

71.758

98.023

0.703
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.758

98.023

0.703
  recA Glaesserella parasuis strain SC1401

69.602

99.435

0.692
  recA Ralstonia pseudosolanacearum GMI1000

69.617

95.763

0.667
  recA Neisseria gonorrhoeae MS11

71.914

91.525

0.658
  recA Neisseria gonorrhoeae MS11

71.914

91.525

0.658
  recA Neisseria gonorrhoeae strain FA1090

71.914

91.525

0.658
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.554

93.785

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.874

94.35

0.593
  recA Helicobacter pylori strain NCTC11637

61.224

96.893

0.593
  recA Helicobacter pylori 26695

60.641

96.893

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

60.06

94.068

0.565
  recA Streptococcus mitis NCTC 12261

56.857

98.87

0.562
  recA Streptococcus mutans UA159

60.923

91.808

0.559
  recA Streptococcus pneumoniae Rx1

59.509

92.09

0.548
  recA Streptococcus pneumoniae D39

59.509

92.09

0.548
  recA Streptococcus pneumoniae R6

59.509

92.09

0.548
  recA Streptococcus pneumoniae TIGR4

59.509

92.09

0.548
  recA Streptococcus pyogenes NZ131

58.841

92.655

0.545
  recA Streptococcus mitis SK321

59.443

91.243

0.542
  recA Latilactobacillus sakei subsp. sakei 23K

59.502

90.678

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.025

91.525

0.531
  recA Lactococcus lactis subsp. cremoris KW2

56.656

91.243

0.517

Multiple sequence alignment