Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ODI_RS10130 Genome accession   NZ_LT907988
Coordinates   2168524..2169588 (+) Length   354 a.a.
NCBI ID   WP_067759966.1    Uniprot ID   A0A1C3K8F3
Organism   Orrella dioscoreae isolate Orrdi1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2163524..2174588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODI_RS10115 (ODI_02086) - 2163950..2165575 (-) 1626 WP_408635943.1 MFS transporter -
  ODI_RS10120 (ODI_02085) - 2165930..2167336 (-) 1407 WP_098021000.1 sensor histidine kinase -
  ODI_RS10125 (ODI_02084) - 2167455..2168183 (-) 729 WP_067759969.1 response regulator transcription factor -
  ODI_RS10130 (ODI_02082) recA 2168524..2169588 (+) 1065 WP_067759966.1 recombinase RecA Machinery gene
  ODI_RS10135 (ODI_02081) recX 2169675..2170205 (+) 531 WP_067759964.1 recombination regulator RecX -
  ODI_RS10140 (ODI_02080) - 2170208..2171128 (-) 921 WP_067759962.1 LysR family transcriptional regulator -
  ODI_RS10145 (ODI_02079) metE 2171311..2173608 (+) 2298 WP_067759959.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  ODI_RS10150 (ODI_02078) - 2173770..2174321 (+) 552 WP_067759956.1 DUF2889 domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37806.25 Da        Isoelectric Point: 5.3505

>NTDB_id=1148226 ODI_RS10130 WP_067759966.1 2168524..2169588(+) (recA) [Orrella dioscoreae isolate Orrdi1]
MDDKQSKAAAAEKSKALAAALSQIEKQFGKGSIMLYGGNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQVIAEMQKVGGTCAFVDAEHALDVQYASKLGVKLTELLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSIK
RGEEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVQAGVVEKSGAWYSYNGDRIGQGKDNVREYLRER
PALAFEIENKVRAQMGVAERAAGVVAATAGSEED

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1148226 ODI_RS10130 WP_067759966.1 2168524..2169588(+) (recA) [Orrella dioscoreae isolate Orrdi1]
ATGGACGACAAACAGAGCAAGGCCGCCGCGGCGGAAAAATCCAAGGCGCTGGCCGCTGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCTGTACGGCGGCAACGAGGTCGAGCACGACATTCAGGTCGTCTCCACCGGCTCGCTGG
GCCTGGACATCGCCCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAAATCTACGGCCCGGAATCGTCGGGCAAG
ACCACGTTGACCCTGCAGGTCATCGCGGAAATGCAGAAAGTGGGCGGCACCTGCGCCTTCGTCGACGCCGAGCACGCGCT
CGACGTGCAGTACGCCTCCAAGCTGGGCGTGAAGCTCACCGAGCTGCTGATCTCGCAGCCGGACACGGGCGAACAGGCGC
TGGAAATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTGGCGGCCCTGGTGCCCAAG
GCTGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCTTGCAAGCCCGCCTCATGAGCCAGGCGCTGCGCAAGCTCAC
GGCCACCATCAAGCGCACGAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACTCGTCCGTGCGCCTGGACATCCGCCGCACCGGTTCCATCAAG
CGTGGCGAGGAAGTGGTCGGCAACGAAACGCGCGTGAAGGTCGTCAAGAACAAGGTGGCACCGCCTTTCAAGCAAGCCGA
GTTCGACATCATGTACGGCGCGGGCATCTCGCGCGAAGGCGAGATCATCGACCTGGGCGTGCAAGCCGGCGTGGTCGAGA
AGTCGGGCGCCTGGTACAGCTACAACGGCGACCGCATCGGCCAAGGCAAGGACAACGTGCGCGAATACCTGCGTGAGCGT
CCGGCGCTGGCCTTCGAGATCGAGAACAAGGTCCGTGCCCAGATGGGCGTGGCCGAGCGTGCCGCCGGTGTCGTGGCGGC
CACGGCCGGCTCCGAAGAGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3K8F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.609

97.458

0.805
  recA Neisseria gonorrhoeae MS11

75.153

92.09

0.692
  recA Neisseria gonorrhoeae MS11

75.153

92.09

0.692
  recA Neisseria gonorrhoeae strain FA1090

75.153

92.09

0.692
  recA Pseudomonas stutzeri DSM 10701

74.233

92.09

0.684
  recA Vibrio cholerae strain A1552

70.468

96.61

0.681
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.468

96.61

0.681
  recA Acinetobacter baylyi ADP1

69.006

96.61

0.667
  recA Glaesserella parasuis strain SC1401

68.222

96.893

0.661
  recA Acinetobacter baumannii D1279779

71.517

91.243

0.653
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.046

92.938

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

96.893

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

63.609

92.373

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

62.538

93.503

0.585
  recA Helicobacter pylori 26695

62.614

92.938

0.582
  recA Helicobacter pylori strain NCTC11637

62.31

92.938

0.579
  recA Streptococcus pyogenes NZ131

57.67

99.435

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.846

91.808

0.568
  recA Streptococcus pneumoniae R6

59.524

94.915

0.565
  recA Streptococcus pneumoniae TIGR4

59.524

94.915

0.565
  recA Streptococcus pneumoniae Rx1

59.524

94.915

0.565
  recA Streptococcus pneumoniae D39

59.524

94.915

0.565
  recA Streptococcus mitis SK321

58.997

95.763

0.565
  recA Streptococcus mitis NCTC 12261

58.997

95.763

0.565
  recA Streptococcus mutans UA159

58.58

95.48

0.559
  recA Lactococcus lactis subsp. cremoris KW2

58.407

95.763

0.559

Multiple sequence alignment