Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CKV72_RS05310 Genome accession   NZ_LT906477
Coordinates   1098617..1099672 (+) Length   351 a.a.
NCBI ID   WP_168943609.1    Uniprot ID   -
Organism   Clostridium cochlearium strain NCTC13027     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1093617..1104672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV72_RS05295 (SAMEA4530647_01105) - 1094046..1096292 (+) 2247 WP_089864244.1 DNA translocase FtsK -
  CKV72_RS05300 (SAMEA4530647_01106) rimO 1096304..1097638 (+) 1335 WP_089864247.1 30S ribosomal protein S12 methylthiotransferase RimO -
  CKV72_RS05305 (SAMEA4530647_01107) pgsA 1097622..1098185 (+) 564 WP_089864250.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CKV72_RS05310 (SAMEA4530647_01108) recA 1098617..1099672 (+) 1056 WP_168943609.1 recombinase RecA Machinery gene
  CKV72_RS05315 (SAMEA4530647_01109) rny 1100100..1101623 (+) 1524 WP_413814371.1 ribonuclease Y -
  CKV72_RS05320 (SAMEA4530647_01110) - 1101771..1102031 (+) 261 WP_089864259.1 stage V sporulation protein S -
  CKV72_RS05325 (SAMEA4530647_01111) - 1102147..1103004 (+) 858 WP_095177692.1 decaprenyl-phosphate phosphoribosyltransferase -
  CKV72_RS05330 (SAMEA4530647_01112) - 1103026..1104291 (+) 1266 WP_095177693.1 hypothetical protein -
  CKV72_RS05335 (SAMEA4530647_01113) - 1104296..1104652 (+) 357 WP_089864266.1 SMR family transporter -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38387.93 Da        Isoelectric Point: 5.6182

>NTDB_id=1147996 CKV72_RS05310 WP_168943609.1 1098617..1099672(+) (recA) [Clostridium cochlearium strain NCTC13027]
MDKEKLKAIEAAMGQIEKQFGKGSVMKLGEKNVLDIEAISTGCLGMDIALGIGGVPKGRIVEIYGPESSGKTTVALHIIA
EAQKEGGVAAFIDAEHALDPSYARKLGVDIDNLIVSQPDTGEQGLEIAEALVRSNAIDVVVVDSVAALVPKAEIQGEMGD
SHVGLQARLMSQALRKLAGSINKSNCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDEFLGNR
TRVKITKNKVAPPFKNAEFDIMYNEGISRTGDVLDLGVKEEIVQKSGSWFSYNDVRLGQGRENAKQFLKDNPELLYEIEN
TIREKYGLPLVKNNVKAEKDEKKEDKKEDKE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=1147996 CKV72_RS05310 WP_168943609.1 1098617..1099672(+) (recA) [Clostridium cochlearium strain NCTC13027]
ATGGATAAAGAAAAATTAAAAGCCATAGAAGCAGCTATGGGACAAATAGAAAAGCAATTTGGTAAAGGCTCTGTAATGAA
GCTTGGTGAAAAAAATGTATTGGATATAGAAGCTATATCAACAGGATGTCTTGGAATGGACATAGCTTTAGGTATAGGGG
GAGTTCCAAAGGGAAGAATAGTAGAAATATATGGTCCTGAATCTTCAGGTAAAACTACTGTGGCATTACATATAATAGCA
GAAGCTCAAAAAGAAGGAGGAGTTGCAGCTTTTATAGATGCAGAGCACGCCTTAGATCCTTCCTATGCAAGAAAACTAGG
AGTTGATATAGATAATTTAATAGTTTCTCAACCAGATACAGGAGAACAGGGGCTAGAAATAGCAGAAGCTCTTGTTAGGT
CTAATGCTATAGATGTAGTAGTTGTGGACTCTGTAGCAGCTTTAGTACCTAAGGCGGAAATTCAAGGAGAAATGGGAGAT
TCTCACGTAGGTTTACAAGCAAGGCTAATGTCTCAAGCTCTTAGAAAATTAGCTGGATCTATAAACAAATCCAATTGTGT
AGCTATTTTTATAAATCAATTAAGAGAAAAGGTTGGAATAATGTTTGGAAATCCTGAAACTACTCCAGGAGGAAGAGCAC
TTAAATTTTATTCTAGTGTAAGACTAGATGTTAGAAGAATAGATTCTATAAAACAAGGTGATGAATTCTTAGGAAACAGA
ACTAGAGTAAAAATAACTAAAAATAAAGTAGCACCGCCTTTTAAAAATGCTGAATTTGATATAATGTACAATGAGGGTAT
ATCAAGGACAGGAGATGTTTTAGATTTAGGTGTTAAAGAGGAAATAGTTCAAAAAAGTGGCTCATGGTTTTCCTATAATG
ATGTAAGATTAGGTCAAGGTAGAGAAAATGCAAAACAATTTTTAAAAGATAATCCAGAACTACTTTATGAAATAGAAAAT
ACTATAAGAGAAAAATATGGTCTTCCACTTGTAAAAAATAATGTAAAAGCAGAAAAAGACGAGAAAAAAGAAGATAAAAA
GGAAGATAAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.963

91.453

0.658
  recA Streptococcus mutans UA159

63.456

100

0.638
  recA Acinetobacter baylyi ADP1

63.188

98.291

0.621
  recA Pseudomonas stutzeri DSM 10701

64.392

96.011

0.618
  recA Streptococcus mitis SK321

63.158

97.436

0.615
  recA Streptococcus mitis NCTC 12261

63.158

97.436

0.615
  recA Streptococcus pneumoniae R6

60.674

100

0.615
  recA Streptococcus pneumoniae D39

60.674

100

0.615
  recA Streptococcus pneumoniae Rx1

60.674

100

0.615
  recA Streptococcus pneumoniae TIGR4

60.674

100

0.615
  recA Helicobacter pylori 26695

65.244

93.447

0.61
  recA Streptococcus pyogenes NZ131

65.244

93.447

0.61
  recA Helicobacter pylori strain NCTC11637

65.244

93.447

0.61
  recA Acinetobacter baumannii D1279779

62.573

97.436

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.939

93.447

0.607
  recA Neisseria gonorrhoeae MS11

64.35

94.302

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

65.538

92.593

0.607
  recA Neisseria gonorrhoeae MS11

64.35

94.302

0.607
  recA Neisseria gonorrhoeae strain FA1090

64.35

94.302

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.134

93.732

0.601
  recA Lactococcus lactis subsp. cremoris KW2

63.83

93.732

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.815

92.308

0.598
  recA Vibrio cholerae strain A1552

64.815

92.308

0.598
  recA Glaesserella parasuis strain SC1401

64.486

91.453

0.59
  recA Ralstonia pseudosolanacearum GMI1000

65.815

89.174

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

91.453

0.556

Multiple sequence alignment