Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CKV93_RS04440 Genome accession   NZ_LT906464
Coordinates   919259..920314 (+) Length   351 a.a.
NCBI ID   WP_095116438.1    Uniprot ID   A0A240C3T9
Organism   Staphylococcus muscae strain NCTC13833     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 914259..925314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV93_RS04415 (SAMEA4412661_00900) ymfI 914913..915614 (+) 702 WP_095116428.1 elongation factor P 5-aminopentanone reductase -
  CKV93_RS04420 (SAMEA4412661_00901) - 915663..916496 (+) 834 WP_095116430.1 YmfK family protein -
  CKV93_RS10700 (SAMEA4412661_00902) - 916513..916908 (+) 396 WP_095116432.1 RodZ family helix-turn-helix domain-containing protein -
  CKV93_RS04430 (SAMEA4412661_00903) pgsA 916948..917532 (+) 585 WP_095116434.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CKV93_RS04435 (SAMEA4412661_00904) - 917900..919051 (+) 1152 WP_095116436.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  CKV93_RS04440 (SAMEA4412661_00905) recA 919259..920314 (+) 1056 WP_095116438.1 recombinase RecA Machinery gene
  CKV93_RS04445 (SAMEA4412661_00906) rny 920595..922154 (+) 1560 WP_095116440.1 ribonuclease Y -
  CKV93_RS04450 (SAMEA4412661_00907) pcp 922197..922838 (-) 642 WP_095116442.1 pyroglutamyl-peptidase I -
  CKV93_RS04455 (SAMEA4412661_00908) - 922985..923362 (+) 378 WP_095116444.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37863.83 Da        Isoelectric Point: 5.0815

>NTDB_id=1147738 CKV93_RS04440 WP_095116438.1 919259..920314(+) (recA) [Staphylococcus muscae strain NCTC13833]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKDRNVSTISTGSVTLDNALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAEALGVDINNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGQGISRQGELIDLGVAHDIVDKSGAWYSYNGERMGQGKENVKLFLKENPQLEAEINQ
KLREKLGIAGDVDAEAEAEEHSEDADTLFDA

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=1147738 CKV93_RS04440 WP_095116438.1 919259..920314(+) (recA) [Staphylococcus muscae strain NCTC13833]
TTGGATAATGAACGTCAGAAAGCATTAGATACAGTAATCAAAAATATGGAGAAATCATTCGGTAAAGGTGCGGTAATGAA
GCTTGGTGATAACAAAGACCGCAATGTTTCAACAATCTCAACAGGATCTGTGACATTAGATAACGCATTAGGGGTAGGTG
GTTACCCGAAAGGACGTATTATCGAAGTATACGGACCTGAGAGTTCTGGTAAAACAACTGTTGCACTACATGCGATTGCA
GAAGTGCAAAAAAATGGTGGTGTAGCTGCATTTATTGATGCTGAACATGCGCTAGACCCAGTGTATGCAGAAGCACTAGG
CGTAGATATTAATAATCTATATCTTTCTCAACCGGATCATGGGGAGCAAGGCCTAGAGATTGCTGAAGCATTTGTTCGCA
GTGGTGCTGTGGATATCGTGGTCGTTGACTCCGTTGCAGCATTAACACCAAAGGCAGAGATTGAAGGGGAAATGGGTGAC
ACGCATGTTGGTTTACAAGCACGTTTGATGTCACAAGCATTGCGCAAACTTTCAGCTGCGATTTCAAAGTCAAAAACGAC
TGCTATCTTTATCAACCAAATTCGTGAAAAAGTTGGCGTTATGTTCGGCAACCCTGAAACAACACCGGGCGGTCGTGCAT
TAAAGTTTTATAGCTCTGTTCGTTTAGAAGTAAGACGTGCTGAGCAGTTGAAACAAGGTCAAGATATTGTTGGTAACCGA
ACAAAGATAAAAGTTGTAAAAAACAAAGTAGCACCACCGTTCAAAGTGGCAGAAGTTGATATTATGTACGGTCAAGGTAT
CTCTCGACAAGGTGAATTAATCGACTTAGGTGTCGCACATGATATCGTTGATAAGTCAGGTGCATGGTATTCTTACAATG
GTGAACGCATGGGTCAAGGTAAAGAAAATGTTAAACTTTTCTTGAAAGAGAACCCACAATTAGAAGCAGAAATCAATCAA
AAATTGCGTGAAAAACTTGGCATTGCTGGTGATGTTGATGCTGAAGCTGAAGCTGAAGAACATTCAGAAGATGCAGATAC
ATTGTTTGATGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240C3T9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.38

92.877

0.709
  recA Latilactobacillus sakei subsp. sakei 23K

69.253

99.145

0.687
  recA Streptococcus pyogenes NZ131

66.286

99.715

0.661
  recA Streptococcus mutans UA159

63.92

100

0.641
  recA Streptococcus pneumoniae R6

64.348

98.291

0.632
  recA Streptococcus mitis SK321

64.348

98.291

0.632
  recA Streptococcus pneumoniae Rx1

64.348

98.291

0.632
  recA Streptococcus pneumoniae D39

64.348

98.291

0.632
  recA Streptococcus pneumoniae TIGR4

64.348

98.291

0.632
  recA Streptococcus mitis NCTC 12261

64.162

98.575

0.632
  recA Acinetobacter baumannii D1279779

63.45

97.436

0.618
  recA Acinetobacter baylyi ADP1

62.069

99.145

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.235

96.866

0.613
  recA Lactococcus lactis subsp. cremoris KW2

64.458

94.587

0.61
  recA Neisseria gonorrhoeae strain FA1090

64.438

93.732

0.604
  recA Neisseria gonorrhoeae MS11

64.438

93.732

0.604
  recA Neisseria gonorrhoeae MS11

64.438

93.732

0.604
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.417

92.877

0.598
  recA Vibrio cholerae strain A1552

64.417

92.877

0.598
  recA Helicobacter pylori strain NCTC11637

64.024

93.447

0.598
  recA Helicobacter pylori 26695

64.024

93.447

0.598
  recA Ralstonia pseudosolanacearum GMI1000

63.526

93.732

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.934

94.302

0.584
  recA Pseudomonas stutzeri DSM 10701

58.671

98.575

0.578
  recA Glaesserella parasuis strain SC1401

57.714

99.715

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.453

0.561

Multiple sequence alignment