Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CKV88_RS05755 Genome accession   NZ_LT906460
Coordinates   1241972..1243021 (+) Length   349 a.a.
NCBI ID   WP_002464243.1    Uniprot ID   G5JJ88
Organism   Staphylococcus simiae strain NCTC13838     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1236972..1248021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV88_RS05730 (SAMEA4384339_01164) ymfI 1237328..1238032 (+) 705 WP_002464248.1 elongation factor P 5-aminopentanone reductase -
  CKV88_RS05735 (SAMEA4384339_01165) - 1238125..1238952 (+) 828 WP_002464247.1 YmfK family protein -
  CKV88_RS05740 (SAMEA4384339_01166) - 1238975..1239367 (+) 393 WP_002464246.1 RodZ family helix-turn-helix domain-containing protein -
  CKV88_RS05745 (SAMEA4384339_01167) pgsA 1239401..1239976 (+) 576 WP_002464245.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CKV88_RS05750 (SAMEA4384339_01168) - 1240656..1241798 (+) 1143 WP_002464244.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  CKV88_RS05755 (SAMEA4384339_01169) recA 1241972..1243021 (+) 1050 WP_002464243.1 recombinase RecA Machinery gene
  CKV88_RS05760 (SAMEA4384339_01170) rny 1243485..1245044 (+) 1560 WP_002464242.1 ribonuclease Y -
  CKV88_RS05765 (SAMEA4384339_01171) - 1245225..1246541 (+) 1317 WP_095092675.1 ISL3 family transposase -
  CKV88_RS05770 (SAMEA4384339_01172) - 1247327..1247542 (-) 216 WP_002463863.1 hypothetical protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37873.80 Da        Isoelectric Point: 4.9320

>NTDB_id=1147635 CKV88_RS05755 WP_002464243.1 1241972..1243021(+) (recA) [Staphylococcus simiae strain NCTC13838]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKARRVSSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDVVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDR
KLREKLGIFDGDVEGSEEEAPKSLFEDEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1147635 CKV88_RS05755 WP_002464243.1 1241972..1243021(+) (recA) [Staphylococcus simiae strain NCTC13838]
TTGGATAATGATCGTCAAAAAGCTCTAGATACAGTAATAAAAAATATGGAAAAGTCTTTTGGTAAAGGTGCAGTAATGAA
ACTTGGGGACAATAAAGCCCGTCGTGTTTCCAGTACATCAAGTGGTTCAGTGACTTTGGATAATGCATTAGGCGTCGGTG
GATACCCTAAAGGACGTATTATTGAAATATATGGTCCTGAAAGTTCTGGTAAAACGACTGTAGCACTTCATGCCATTGCT
GAAGTACAAAGTAATGGAGGTGTAGCAGCATTTATAGATGCTGAACATGCGTTAGACCCAGTCTATGCTCAAGCATTAGG
CGTAGATATTGATAATTTATATTTGTCACAACCTGACCATGGCGAACAAGGTTTAGAAATTGCAGAAGCATTTGTACGAA
GTGGTGCTGTTGATGTTGTAGTAGTTGACTCAGTTGCAGCTCTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTCGGTTTACAAGCACGTTTGATGTCACAAGCCTTACGTAAGTTGTCGGGTGCTATTTCTAAATCTAATACAAC
AGCTATTTTTATTAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGTAACCCTGAGACAACTCCAGGTGGTAGAGCAT
TGAAATTCTATAGTTCTGTTAGACTAGAAGTACGTCGTGCTGAACAATTGAAACAAGGACAAGAAATTGTTGGTAATAGA
ACTAAAATTAAGGTTGTTAAGAATAAAGTTGCACCCCCATTTAGAGTTGCAGAAGTAGATATTATGTATGGACAAGGTAT
CTCTAAAGAAGGCGAACTCATTGATTTAGGTGTTGAAAACGAAATTGTTGATAAATCAGGTGCTTGGTATTCATATAATG
GTGAAAGAATGGGCCAAGGTAAAGAAAACGTTAAAATGTACTTAAAAGAGAATCCTCAAATTAAGGAAGAAATTGATCGT
AAATTACGTGAAAAACTTGGAATTTTTGATGGTGACGTTGAAGGTTCTGAAGAGGAAGCTCCTAAGTCACTTTTTGAAGA
TGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5JJ88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.994

93.41

0.719
  recA Latilactobacillus sakei subsp. sakei 23K

68.3

99.427

0.679
  recA Streptococcus pyogenes NZ131

68.389

94.269

0.645
  recA Acinetobacter baumannii D1279779

64.08

99.713

0.639
  recA Streptococcus mutans UA159

66.168

95.702

0.633
  recA Streptococcus pneumoniae R6

66.366

95.415

0.633
  recA Streptococcus pneumoniae Rx1

66.366

95.415

0.633
  recA Streptococcus pneumoniae D39

66.366

95.415

0.633
  recA Streptococcus pneumoniae TIGR4

66.366

95.415

0.633
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.706

97.421

0.63
  recA Streptococcus mitis NCTC 12261

66.066

95.415

0.63
  recA Neisseria gonorrhoeae MS11

64.516

97.708

0.63
  recA Neisseria gonorrhoeae strain FA1090

64.516

97.708

0.63
  recA Neisseria gonorrhoeae MS11

64.516

97.708

0.63
  recA Streptococcus mitis SK321

65.766

95.415

0.628
  recA Lactococcus lactis subsp. cremoris KW2

65.559

94.842

0.622
  recA Acinetobacter baylyi ADP1

66.258

93.41

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.951

93.41

0.616
  recA Vibrio cholerae strain A1552

65.951

93.41

0.616
  recA Helicobacter pylori 26695

64.939

93.983

0.61
  recA Helicobacter pylori strain NCTC11637

64.634

93.983

0.607
  recA Ralstonia pseudosolanacearum GMI1000

65.495

89.685

0.587
  recA Pseudomonas stutzeri DSM 10701

62.883

93.41

0.587
  recA Glaesserella parasuis strain SC1401

58

100

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

94.842

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.129

91.404

0.559

Multiple sequence alignment