Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CKV71_RS08005 Genome accession   NZ_LT906447
Coordinates   1707801..1708868 (-) Length   355 a.a.
NCBI ID   WP_095105586.1    Uniprot ID   -
Organism   Staphylococcus piscifermentans strain NCTC13836     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1702801..1713868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV71_RS07985 (SAMEA4384060_01646) - 1703595..1703813 (+) 219 WP_095105572.1 hypothetical protein -
  CKV71_RS07990 (SAMEA4384060_01647) - 1703888..1704712 (-) 825 WP_095105574.1 LysR family transcriptional regulator -
  CKV71_RS07995 (SAMEA4384060_01648) - 1704834..1705826 (+) 993 WP_095105580.1 YeiH family protein -
  CKV71_RS08000 (SAMEA4384060_01649) rny 1705967..1707526 (-) 1560 WP_095105584.1 ribonuclease Y -
  CKV71_RS08005 (SAMEA4384060_01650) recA 1707801..1708868 (-) 1068 WP_095105586.1 recombinase RecA Machinery gene
  CKV71_RS08010 (SAMEA4384060_01651) - 1709041..1710183 (-) 1143 WP_095105588.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  CKV71_RS08015 (SAMEA4384060_01652) pgsA 1710330..1710911 (-) 582 WP_095105590.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CKV71_RS08020 (SAMEA4384060_01653) - 1710941..1711339 (-) 399 WP_095105592.1 RodZ family helix-turn-helix domain-containing protein -
  CKV71_RS08025 (SAMEA4384060_01654) - 1711361..1712200 (-) 840 WP_095105594.1 DUF3388 domain-containing protein -
  CKV71_RS08030 (SAMEA4384060_01655) ymfI 1712334..1713041 (-) 708 WP_095105596.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38678.70 Da        Isoelectric Point: 5.0358

>NTDB_id=1147343 CKV71_RS08005 WP_095105586.1 1707801..1708868(-) (recA) [Staphylococcus piscifermentans strain NCTC13836]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKARRVSSISSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQKQGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNCTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKNYLKEHPEIKEDIDN
KLRQKLGIFDGDVEEKDEKEAKAEKNENANLFDEE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1147343 CKV71_RS08005 WP_095105586.1 1707801..1708868(-) (recA) [Staphylococcus piscifermentans strain NCTC13836]
TTGGATAATGAACGTCAAAAAGCGCTAGATACTGTTATTAAGAATATGGAGAAATCGTTTGGTAAAGGTGCCGTTATGAA
ACTTGGCGATAACAAAGCTCGTCGTGTTTCAAGCATATCAAGCGGATCAGTAACATTAGATAATGCTTTAGGTGTAGGTG
GTTACCCTAAAGGTAGAATTGTAGAAATTTATGGACCAGAAAGTTCTGGTAAAACAACTGTAGCTTTGCATGCTATTGCT
GAAGTGCAGAAACAAGGTGGCGTCGCTGCATTTATCGACGCTGAACATGCGTTAGATCCAGTTTATGCTGAAGCATTAGG
TGTAGATATCGATAATTTATATTTATCTCAACCTGACCATGGGGAACAAGGTCTAGAGATTGCAGAGGCATTTGTACGAA
GCGGTGCTGTTGATATTATTGTAGTCGACTCTGTAGCAGCCTTAACACCGAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTCGGTTTACAAGCACGTTTAATGTCTCAAGCTTTGCGTAAATTATCTGGTGCTATTTCAAAATCTAATTGTAC
TGCAGTATTTATCAACCAAATCCGTGAAAAAGTCGGAGTAATGTTCGGTAATCCTGAAACAACGCCAGGCGGCAGAGCGT
TGAAATTCTATAGCTCAGTTCGTTTAGAAGTGCGTCGTGCAGAACAATTGAAGCAAGGTCAAGAAATTGTGGGTAACCGT
ACTAAAATTAAAGTTGTTAAAAACAAAGTAGCACCTCCATTCAGAGTAGCCGAAGTTGATATTATGTACGGCCAAGGTAT
TTCAAAAGAAGGCGAATTAATTGATTTAGGTGTTGAAAATGACATCGTTGATAAATCAGGTGCTTGGTATTCTTATAATG
GTGAAAGAATGGGCCAAGGTAAAGAAAACGTTAAAAATTACTTGAAAGAACATCCAGAAATCAAAGAAGATATTGATAAT
AAATTAAGACAAAAATTAGGTATCTTTGATGGGGACGTTGAAGAAAAAGACGAAAAAGAAGCGAAAGCTGAGAAAAATGA
AAACGCAAATTTATTCGATGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.46

91.831

0.693
  recA Latilactobacillus sakei subsp. sakei 23K

71.642

94.366

0.676
  recA Streptococcus pneumoniae TIGR4

64.943

98.028

0.637
  recA Streptococcus pneumoniae Rx1

64.943

98.028

0.637
  recA Streptococcus pneumoniae D39

64.943

98.028

0.637
  recA Streptococcus pneumoniae R6

64.943

98.028

0.637
  recA Streptococcus mutans UA159

64.205

99.155

0.637
  recA Streptococcus mitis NCTC 12261

63.352

99.155

0.628
  recA Streptococcus mitis SK321

63.068

99.155

0.625
  recA Streptococcus pyogenes NZ131

67.477

92.676

0.625
  recA Neisseria gonorrhoeae MS11

63.506

98.028

0.623
  recA Neisseria gonorrhoeae MS11

63.506

98.028

0.623
  recA Neisseria gonorrhoeae strain FA1090

63.506

98.028

0.623
  recA Acinetobacter baylyi ADP1

62.323

99.437

0.62
  recA Acinetobacter baumannii D1279779

63.743

96.338

0.614
  recA Lactococcus lactis subsp. cremoris KW2

65.861

93.239

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.258

91.831

0.608
  recA Vibrio cholerae strain A1552

66.258

91.831

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.653

92.676

0.608
  recA Helicobacter pylori 26695

63.415

92.394

0.586
  recA Helicobacter pylori strain NCTC11637

63.11

92.394

0.583
  recA Ralstonia pseudosolanacearum GMI1000

66.134

88.169

0.583
  recA Pseudomonas stutzeri DSM 10701

63.19

91.831

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

93.239

0.572
  recA Glaesserella parasuis strain SC1401

62.539

90.986

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

90.141

0.541

Multiple sequence alignment