Detailed information NTG1147316

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: CKV65_RS04955
• Genome accession: NZ_LT906446
• Coordinates: 1041006..1042073 (-)
• Length: 355 a.a.
• NCBI ID: WP_027890279.1
• Uniprot ID: A0A239TNZ1
• Organism: Megamonas hypermegale strain NCTC10570
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1031900..1041025	1041006..1042073	flank	-19

Gene organization within MGE regions

Location: 1031900..1042073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKV65_RS04900 (SAMEA4364220_01001)	-	1031900..1032439 (-)	540	WP_027890270.1	flavodoxin family protein	-
CKV65_RS04905 (SAMEA4364220_01002)	-	1032463..1033095 (-)	633	WP_027890271.1	flavodoxin family protein	-
CKV65_RS04910 (SAMEA4364220_01003)	-	1033115..1033969 (-)	855	WP_331715175.1	alpha/beta fold hydrolase	-
CKV65_RS04915 (SAMEA4364220_01005)	-	1034206..1034895 (-)	690	Protein_975	aldo/keto reductase	-
CKV65_RS10925 (SAMEA4364220_01006)	-	1034911..1035048 (-)	138	WP_231922719.1	hypothetical protein	-
CKV65_RS04920 (SAMEA4364220_01007)	-	1035061..1036062 (-)	1002	WP_027890272.1	aldo/keto reductase	-
CKV65_RS04925 (SAMEA4364220_01008)	-	1036166..1037062 (-)	897	WP_027890273.1	LysR family transcriptional regulator	-
CKV65_RS04930 (SAMEA4364220_01009)	-	1037092..1037937 (-)	846	WP_027890274.1	DMT family transporter	-
CKV65_RS04935 (SAMEA4364220_01010)	-	1038018..1038629 (-)	612	WP_027890275.1	flavodoxin	-
CKV65_RS04940 (SAMEA4364220_01011)	-	1038756..1039925 (-)	1170	WP_027890276.1	iron-containing alcohol dehydrogenase	-
CKV65_RS04945 (SAMEA4364220_01012)	-	1040054..1040509 (+)	456	WP_027890277.1	MerR family transcriptional regulator	-
CKV65_RS04950 (SAMEA4364220_01013)	-	1040564..1041025 (-)	462	WP_027890278.1	regulatory protein RecX	-
CKV65_RS04955 (SAMEA4364220_01014)	recA	1041006..1042073 (-)	1068	WP_027890279.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 355 a.a.
• Molecular weight: 38423.93 Da
• Isoelectric Point: 5.0921

>NTDB_id=1147316 CKV65_RS04955 WP_027890279.1 1041006..1042073(-) (recA) [Megamonas hypermegale strain NCTC10570]
MDKSMDKVEALQNALKQIERDFGKGSIMKLGDASANMNIEVIHTGCLPLDAALGVGGVPRGRIVEIFGPESSGKTTVALH
MVAEAQKIGGIAAFIDAEHALDPIYAKKLGVDIDNLLISQPDNGEQALEIVDALVRSGAIDIVVVDSVAALVPKAEIEGD
MGDSHVGLQARLMSQAMRKLTGVISKSRTTAIFINQIREKVGVMFGNPETTTGGRALKFYASIRLDVRKIDTIKQGNDPV
GSRTRIKVVKNKVAPPFKQAEFDIMYGEGISREGSLIDMGVAFEIMDKSGSWFSYQGTRLGQGKENVKAYLREHADTALE
IENKIREKLFARPNEGEAVEEEDVAASVENEKAEQ

Nucleotide

• Length: 1068 bp

>NTDB_id=1147316 CKV65_RS04955 WP_027890279.1 1041006..1042073(-) (recA) [Megamonas hypermegale strain NCTC10570]
ATGGATAAATCAATGGATAAAGTTGAAGCATTGCAAAATGCTTTAAAACAAATTGAACGTGATTTTGGCAAAGGTTCTAT
TATGAAATTGGGCGATGCCAGTGCTAATATGAATATTGAAGTAATTCACACAGGCTGTTTACCACTTGATGCAGCTTTAG
GTGTTGGCGGTGTACCTCGTGGTCGTATTGTTGAAATTTTTGGCCCTGAATCATCTGGTAAAACAACAGTTGCACTTCAT
ATGGTTGCAGAAGCACAAAAAATTGGCGGTATAGCAGCTTTCATCGATGCAGAACACGCACTTGACCCGATATATGCTAA
AAAACTTGGCGTGGATATCGATAATTTGCTCATTTCTCAACCAGATAATGGAGAACAAGCTTTGGAAATCGTTGATGCAT
TAGTGCGAAGCGGCGCAATAGATATAGTTGTAGTCGATTCAGTAGCAGCACTCGTACCAAAAGCTGAAATTGAAGGCGAT
ATGGGAGATTCTCATGTAGGTTTGCAGGCACGACTTATGTCACAAGCTATGCGCAAATTGACAGGTGTCATCAGTAAATC
CCGTACAACAGCAATATTCATCAACCAAATTCGTGAAAAAGTTGGCGTTATGTTCGGCAATCCAGAAACGACTACAGGCG
GTCGTGCGTTGAAATTCTATGCTTCCATTCGTCTTGATGTGCGCAAAATAGATACAATTAAACAAGGCAATGACCCAGTT
GGTAGTCGCACACGTATTAAAGTTGTTAAAAATAAAGTTGCTCCACCATTTAAGCAAGCTGAATTTGACATCATGTACGG
TGAAGGAATTTCACGCGAAGGCAGCCTCATCGATATGGGCGTAGCCTTTGAAATCATGGATAAGAGCGGTTCATGGTTCT
CATATCAAGGTACACGTCTTGGTCAAGGTAAAGAAAATGTAAAAGCATATCTTAGAGAACATGCCGATACAGCTTTGGAA
ATAGAAAATAAAATTAGAGAAAAATTATTCGCTAGACCAAATGAAGGAGAAGCTGTTGAAGAAGAAGACGTAGCAGCTTC
AGTTGAAAATGAAAAAGCAGAACAATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (10-271)

3D structure

• AlphaFold DB: A0A239TNZ1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Bacillus subtilis subsp. subtilis str. 168	71.118	90.704	0.645
recA	Streptococcus pneumoniae Rx1	62.89	99.437	0.625
recA	Streptococcus pneumoniae D39	62.89	99.437	0.625
recA	Streptococcus pneumoniae R6	62.89	99.437	0.625
recA	Streptococcus pneumoniae TIGR4	62.89	99.437	0.625
recA	Vibrio cholerae O1 biovar El Tor strain E7946	63.663	96.901	0.617
recA	Vibrio cholerae strain A1552	63.663	96.901	0.617
recA	Neisseria gonorrhoeae MS11	67.802	90.986	0.617
recA	Neisseria gonorrhoeae strain FA1090	67.802	90.986	0.617
recA	Neisseria gonorrhoeae MS11	67.802	90.986	0.617
recA	Latilactobacillus sakei subsp. sakei 23K	68.454	89.296	0.611
recA	Streptococcus mitis NCTC 12261	62.428	97.465	0.608
recA	Streptococcus mitis SK321	62.139	97.465	0.606
recA	Acinetobacter baumannii D1279779	63.609	95.211	0.606
recA	Streptococcus pyogenes NZ131	64.939	92.394	0.6
recA	Ralstonia pseudosolanacearum GMI1000	65.538	91.549	0.6
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	63.855	93.521	0.597
recA	Lactococcus lactis subsp. cremoris KW2	65.528	90.704	0.594
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.923	91.549	0.594
recA	Acinetobacter baylyi ADP1	62.315	94.93	0.592
recA	Helicobacter pylori strain NCTC11637	64.615	91.549	0.592
recA	Helicobacter pylori 26695	64.615	91.549	0.592
recA	Glaesserella parasuis strain SC1401	64.024	92.394	0.592
recA	Streptococcus mutans UA159	63.385	91.549	0.58
recA	Pseudomonas stutzeri DSM 10701	63.077	91.549	0.577
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	62.691	92.113	0.577