Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CKV90_RS07205 Genome accession   NZ_LT906444
Coordinates   1404162..1405208 (+) Length   348 a.a.
NCBI ID   WP_011702210.1    Uniprot ID   -
Organism   Listeria welshimeri strain NCTC11857     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1399162..1410208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV90_RS07185 (SAMEA4534872_01468) ymfI 1400161..1400892 (+) 732 WP_011702206.1 elongation factor P 5-aminopentanone reductase -
  CKV90_RS07190 (SAMEA4534872_01469) - 1400942..1401907 (+) 966 WP_011702207.1 RodZ family helix-turn-helix domain-containing protein -
  CKV90_RS07195 (SAMEA4534872_01470) pgsA 1401998..1402576 (+) 579 WP_011702208.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CKV90_RS07200 (SAMEA4534872_01471) cinA 1402644..1403891 (+) 1248 WP_011702209.1 competence/damage-inducible protein A Machinery gene
  CKV90_RS07205 (SAMEA4534872_01472) recA 1404162..1405208 (+) 1047 WP_011702210.1 recombinase RecA Machinery gene
  CKV90_RS07210 (SAMEA4534872_01473) rny 1405511..1407073 (+) 1563 WP_011702211.1 ribonuclease Y -
  CKV90_RS07215 (SAMEA4534872_01474) - 1407189..1407686 (+) 498 WP_011702212.1 GNAT family N-acetyltransferase -
  CKV90_RS07220 (SAMEA4534872_01475) - 1407691..1408494 (+) 804 WP_011702213.1 TIGR00282 family metallophosphoesterase -
  CKV90_RS07225 (SAMEA4534872_01476) - 1408511..1408873 (+) 363 WP_011702214.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37963.96 Da        Isoelectric Point: 4.6977

>NTDB_id=1147280 CKV90_RS07205 WP_011702210.1 1404162..1405208(+) (recA) [Listeria welshimeri strain NCTC11857]
MNDRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT
KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEISQR
VREEYEIDGANKEPLEETEETLSLLDDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1147280 CKV90_RS07205 WP_011702210.1 1404162..1405208(+) (recA) [Listeria welshimeri strain NCTC11857]
GTGAACGATCGTCAAGCGGCATTAGACCAAGCATTAAAACAAATTGAAAAACAATTCGGTAAAGGTTCCATCATGAAATT
AGGGGAACATTCAGACCAAAATATATCTACTATTTCCAGTGGCTCATTAGCATTAGATATTGCTTTAGGAGTCGGCGGAT
ATCCTCGAGGACGTATCATTGAAGTTTATGGACCAGAAAGTTCTGGTAAAACAACCGTTGCACTACATGCGATTGCTGAG
GTTCAAGCACAAGGTGGCACAGCAGCATTTATTGATGCCGAACATGCTCTAGACCCAGCATATGCGAAAAACTTAGGTGT
TAACATTGATGAATTACTATTATCTCAACCTGATACAGGAGAACAAGCTTTAGAAATCGCAGAAGCATTAGTAAGAAGTG
GTGCAGTCGATATGTTGGTTATTGACTCTGTAGCCGCATTAGTACCTCGCGCAGAAATTGAAGGCGAAATGGGTGATGCG
CATGTTGGTTTACAAGCGCGTTTAATGTCTCAAGCTCTACGTAAACTTTCCGGAGCTATCAATAAATCCAAAACAATTGC
TATTTTCATTAACCAAATCCGTGAAAAAGTTGGTGTTATGTTTGGTAACCCTGAAATAACTCCTGGTGGGCGCGCACTTA
AGTTCTATTCCACTGTTCGTCTAGAAGTAAGACGTGCGGAACAACTTAAACAAGGTACAGATGTAATGGGTAACAAAACC
AAAATCAAAGTTGTAAAAAATAAGGTAGCTCCCCCATTCCGTATTGCGGAAGTAGATATCATGTACGGAGAAGGTATTTC
ACGCGAAGGTGAACTTGTTGATATGGCTGCAGAAGTAGACGTAATCAATAAGAGTGGTTCTTGGTATTCATACAAAGAAG
AACGTATCGGTCAAGGCCGTGAAAATGCAAAACAATATTTGAAAGAACATACAGACATCCGTGATGAAATTTCACAACGT
GTTCGTGAAGAATATGAAATTGATGGAGCGAACAAAGAACCTCTTGAAGAAACAGAAGAGACTTTAAGTTTGCTAGATGA
CGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.451

94.253

0.796
  recA Latilactobacillus sakei subsp. sakei 23K

77.299

100

0.773
  recA Streptococcus pneumoniae TIGR4

70.482

95.402

0.672
  recA Streptococcus pneumoniae Rx1

70.482

95.402

0.672
  recA Streptococcus pneumoniae D39

70.482

95.402

0.672
  recA Streptococcus pneumoniae R6

70.482

95.402

0.672
  recA Streptococcus mitis NCTC 12261

69.88

95.402

0.667
  recA Streptococcus mitis SK321

69.277

95.402

0.661
  recA Streptococcus pyogenes NZ131

69.817

94.253

0.658
  recA Streptococcus mutans UA159

68.902

94.253

0.649
  recA Lactococcus lactis subsp. cremoris KW2

68.502

93.966

0.644
  recA Vibrio cholerae strain A1552

61.159

99.138

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.159

99.138

0.606
  recA Ralstonia pseudosolanacearum GMI1000

63.914

93.966

0.601
  recA Neisseria gonorrhoeae strain FA1090

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Helicobacter pylori 26695

59.942

98.276

0.589
  recA Helicobacter pylori strain NCTC11637

59.942

98.276

0.589
  recA Acinetobacter baumannii D1279779

59.767

98.563

0.589
  recA Pseudomonas stutzeri DSM 10701

60.651

97.126

0.589
  recA Acinetobacter baylyi ADP1

58.96

99.425

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.702

94.54

0.583
  recA Glaesserella parasuis strain SC1401

63.323

91.667

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.305

92.241

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.912

95.115

0.56

Multiple sequence alignment