Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CKW10_RS21600 Genome accession   NZ_LT906435
Coordinates   4917970..4919034 (-) Length   354 a.a.
NCBI ID   WP_039393076.1    Uniprot ID   A0A5E4Z7A1
Organism   Pandoraea sputorum strain NCTC13161     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4912970..4924034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW10_RS21575 (SAMEA4530655_04350) - 4913309..4914037 (-) 729 WP_039393072.1 TerC family protein -
  CKW10_RS21580 (SAMEA4530655_04351) sucD 4914200..4915081 (-) 882 WP_039393073.1 succinate--CoA ligase subunit alpha -
  CKW10_RS21585 (SAMEA4530655_04352) sucC 4915167..4916333 (-) 1167 WP_039393074.1 ADP-forming succinate--CoA ligase subunit beta -
  CKW10_RS21590 (SAMEA4530655_04353) - 4916330..4917010 (-) 681 WP_039401380.1 DUF2889 domain-containing protein -
  CKW10_RS21595 (SAMEA4530655_04354) recX 4917320..4917865 (-) 546 WP_039393075.1 recombination regulator RecX -
  CKW10_RS21600 (SAMEA4530655_04355) recA 4917970..4919034 (-) 1065 WP_039393076.1 recombinase RecA Machinery gene
  CKW10_RS21605 (SAMEA4530655_04356) - 4919237..4919926 (+) 690 WP_039393077.1 response regulator transcription factor -
  CKW10_RS21610 (SAMEA4530655_04357) - 4919940..4921553 (+) 1614 WP_039393078.1 sensor histidine kinase -
  CKW10_RS21615 (SAMEA4530655_04358) - 4921725..4923383 (+) 1659 WP_039393079.1 MFS transporter -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37797.13 Da        Isoelectric Point: 4.7721

>NTDB_id=1146964 CKW10_RS21600 WP_039393076.1 4917970..4919034(-) (recA) [Pandoraea sputorum strain NCTC13161]
MEESKKGSANLSAEKGKALAAALAQIEKQFGKGSIMRLGDGEVEADIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESS
GKTTLTLQVVAEMQKIGGTCAFIDAEHALDVGYANKLGVSVPELLISQPDTGEQALEIADALVRSGSIDLIIIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCTVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS
IKKGDEVVGNETRVKVVKNKVSPPFREAIFDILYGQGISREGEIIDLGVNAKIVEKAGAWYSYNGEKIGQGKDNAREFLR
ENPEIAHEIENKVRASLGVTAINETGEIEEDDEA

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1146964 CKW10_RS21600 WP_039393076.1 4917970..4919034(-) (recA) [Pandoraea sputorum strain NCTC13161]
ATGGAAGAAAGCAAGAAAGGGTCTGCCAATCTGTCGGCCGAGAAAGGCAAGGCGCTCGCCGCCGCCCTCGCGCAGATCGA
GAAGCAATTCGGCAAGGGCTCGATCATGCGTCTCGGCGACGGCGAGGTCGAAGCGGACATCCAGGTCGTCTCCACGGGCT
CGCTGGGTCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGTGTGATCGAAATTTACGGCCCGGAATCGTCG
GGTAAGACTACGCTCACGCTGCAAGTCGTGGCGGAAATGCAGAAGATCGGCGGCACCTGCGCGTTCATCGATGCAGAGCA
TGCCCTCGACGTCGGTTACGCCAACAAGCTGGGCGTCTCGGTGCCGGAACTGCTGATCTCGCAGCCGGACACGGGCGAAC
AGGCGCTGGAGATCGCCGATGCACTGGTGCGCTCGGGCTCGATCGATCTCATCATCATCGACTCGGTTGCGGCACTGGTG
CCGAAGGCTGAAATCGAAGGCGAGATGGGCGATTCGCTGCCGGGTCTTCAGGCACGTCTGATGTCGCAGGCGCTGCGTAA
GCTGACCGGCACCATCAAGCGCACGAATTGCACGGTGATCTTCATCAACCAGATTCGTATGAAGATCGGCGTCATGTTCG
GCAACCCGGAAACGACGACCGGCGGTAACGCACTGAAGTTCTACTCGTCGGTGCGTCTGGACATCCGCCGTATCGGTTCG
ATCAAGAAGGGCGACGAGGTGGTCGGTAACGAAACCCGCGTCAAGGTCGTCAAGAACAAGGTGTCGCCGCCGTTCCGCGA
AGCGATTTTCGACATTCTCTACGGTCAGGGTATCTCGCGCGAAGGCGAAATCATCGATCTGGGTGTCAACGCGAAGATCG
TCGAGAAGGCCGGTGCCTGGTACAGCTACAACGGCGAGAAGATCGGTCAGGGCAAGGACAACGCGCGGGAATTCCTGCGC
GAAAATCCGGAAATCGCCCACGAGATCGAGAACAAGGTCCGTGCATCGCTGGGTGTGACGGCGATCAACGAAACCGGTGA
GATCGAAGAAGACGACGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4Z7A1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.876

100

0.859
  recA Neisseria gonorrhoeae MS11

72.965

97.175

0.709
  recA Neisseria gonorrhoeae strain FA1090

72.965

97.175

0.709
  recA Neisseria gonorrhoeae MS11

72.965

97.175

0.709
  recA Pseudomonas stutzeri DSM 10701

73.574

94.068

0.692
  recA Acinetobacter baumannii D1279779

70.845

96.893

0.686
  recA Acinetobacter baylyi ADP1

71.386

95.763

0.684
  recA Glaesserella parasuis strain SC1401

69.477

97.175

0.675
  recA Vibrio cholerae strain A1552

72.477

92.373

0.669
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.477

92.373

0.669
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.791

97.175

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

92.373

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.134

92.938

0.596
  recA Helicobacter pylori 26695

64.134

92.938

0.596
  recA Helicobacter pylori strain NCTC11637

63.83

92.938

0.593
  recA Streptococcus mitis NCTC 12261

59.829

99.153

0.593
  recA Streptococcus pneumoniae D39

60.756

97.175

0.59
  recA Streptococcus pneumoniae Rx1

60.756

97.175

0.59
  recA Streptococcus pneumoniae R6

60.756

97.175

0.59
  recA Streptococcus pneumoniae TIGR4

60.756

97.175

0.59
  recA Streptococcus mitis SK321

59.544

99.153

0.59
  recA Streptococcus mutans UA159

60.174

97.175

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

62.236

93.503

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

96.045

0.576
  recA Lactococcus lactis subsp. cremoris KW2

60.121

93.503

0.562
  recA Streptococcus pyogenes NZ131

60.486

92.938

0.562

Multiple sequence alignment