Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CS893_RS00815 Genome accession   NZ_LT635460
Coordinates   160235..161278 (+) Length   347 a.a.
NCBI ID   WP_089086543.1    Uniprot ID   -
Organism   Helicobacter pylori isolate HE178/09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 155235..166278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS893_RS00780 - 155298..155516 (+) 219 WP_001876875.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  CS893_RS00785 ccoP 155518..156396 (+) 879 WP_089086538.1 cytochrome-c oxidase, cbb3-type subunit III -
  CS893_RS00790 - 156407..156613 (+) 207 WP_000670520.1 DUF4006 family protein -
  CS893_RS00795 - 156714..157307 (+) 594 WP_089086539.1 hypothetical protein -
  CS893_RS00800 - 157320..157901 (+) 582 WP_089086540.1 hypothetical protein -
  CS893_RS00805 - 158509..159276 (+) 768 WP_089086541.1 hypothetical protein -
  CS893_RS00810 - 159273..160136 (-) 864 WP_089086542.1 menaquinone biosynthesis family protein -
  CS893_RS00815 recA 160235..161278 (+) 1044 WP_089086543.1 recombinase RecA Machinery gene
  CS893_RS00820 eno 161290..162570 (+) 1281 WP_089086544.1 phosphopyruvate hydratase -
  CS893_RS00825 - 162563..162838 (+) 276 WP_000841059.1 hypothetical protein -
  CS893_RS00830 - 162855..163451 (+) 597 WP_172825144.1 AMIN domain-containing protein -
  CS893_RS00835 - 163456..163944 (+) 489 WP_001951229.1 shikimate kinase -
  CS893_RS00840 - 163965..164921 (+) 957 WP_089086546.1 PDC sensor domain-containing protein -
  CS893_RS00845 - 164918..166054 (-) 1137 WP_089086547.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37651.36 Da        Isoelectric Point: 5.3408

>NTDB_id=1145718 CS893_RS00815 WP_089086543.1 160235..161278(+) (recA) [Helicobacter pylori isolate HE178/09]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKVLADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1145718 CS893_RS00815 WP_089086543.1 160235..161278(+) (recA) [Helicobacter pylori isolate HE178/09]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGATTGGATTTGGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTTTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGACGTGTATTATGCTAAGAG
ATTGGGCGTGGATACAGAAAATTTACTCGTTTCCCAACCAAGCACGGGCGAAGAAGCCTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCGGTGGCGGCCCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGGAAAATCACCGGTGTTTTGCATAAGATGAA
CACTACTCTCATTTTTATCAATCAAATAAGAATGAAGATCGGCATGACGGGTTATGGGAGTCCAGAGACCACAACCGGGG
GTAATGCCTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCCGCTTTAAAACAAAACGAACAGCATATC
GGTAACAGGGCTAAAGCCAAAGTCGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATTATTGATTACGGCGTGAAATTAGACATCGTGGATAAGAGTGGGGCATGGCTTA
GTTACCAGGATAAAAAGCTAGGGCAAGGTAGGGAAAACGCTAAAGCCTTACTGAAAGAAGATAAAGTGCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATCGGCTCTAATGAAGAGATCATGCCCTTACCCGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

98.559

100

0.986
  recA Helicobacter pylori 26695

97.983

100

0.98
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.049

94.524

0.738
  recA Neisseria gonorrhoeae MS11

65.846

93.66

0.617
  recA Neisseria gonorrhoeae MS11

65.846

93.66

0.617
  recA Neisseria gonorrhoeae strain FA1090

65.846

93.66

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

64.308

93.66

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.952

95.677

0.602
  recA Acinetobacter baumannii D1279779

63.303

94.236

0.597
  recA Acinetobacter baylyi ADP1

62.997

94.236

0.594
  recA Ralstonia pseudosolanacearum GMI1000

61.012

96.83

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.417

96.83

0.585
  recA Vibrio cholerae strain A1552

60.417

96.83

0.585
  recA Pseudomonas stutzeri DSM 10701

59.357

98.559

0.585
  recA Glaesserella parasuis strain SC1401

59.756

94.524

0.565
  recA Streptococcus pneumoniae D39

55.271

100

0.559
  recA Streptococcus pneumoniae Rx1

55.271

100

0.559
  recA Streptococcus pneumoniae R6

55.271

100

0.559
  recA Streptococcus pneumoniae TIGR4

55.271

100

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

54.062

100

0.556
  recA Streptococcus pyogenes NZ131

56.97

95.101

0.542
  recA Lactococcus lactis subsp. cremoris KW2

57.143

94.813

0.542
  recA Streptococcus mitis NCTC 12261

56.839

94.813

0.539
  recA Streptococcus mitis SK321

56.535

94.813

0.536
  recA Streptococcus mutans UA159

55.389

96.254

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.521

93.948

0.522

Multiple sequence alignment