Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DAQ1742_RS04325 Genome accession   NZ_LT615367
Coordinates   954613..955689 (+) Length   358 a.a.
NCBI ID   WP_035340172.1    Uniprot ID   A0A375A7P2
Organism   Dickeya aquatica strain 174/2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 949613..960689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAQ1742_RS04300 (DAQ1742_00944) - 950030..950659 (+) 630 WP_035340162.1 LysE family translocator -
  DAQ1742_RS04305 (DAQ1742_00945) cybB 951102..951635 (+) 534 WP_035340164.1 cytochrome b561 -
  DAQ1742_RS04310 (DAQ1742_00946) - 951790..952257 (-) 468 WP_035340166.1 SRPBCC family protein -
  DAQ1742_RS04315 (DAQ1742_00947) - 953122..953655 (-) 534 WP_035340168.1 GNAT family N-acetyltransferase -
  DAQ1742_RS04320 (DAQ1742_00948) pncC 953979..954473 (+) 495 WP_035340170.1 nicotinamide-nucleotide amidase -
  DAQ1742_RS04325 (DAQ1742_00949) recA 954613..955689 (+) 1077 WP_035340172.1 recombinase RecA Machinery gene
  DAQ1742_RS04330 (DAQ1742_00950) - 955778..956254 (+) 477 WP_035340174.1 regulatory protein RecX -
  DAQ1742_RS04335 (DAQ1742_00951) alaS 956394..959021 (+) 2628 WP_035340176.1 alanine--tRNA ligase -
  DAQ1742_RS04340 (DAQ1742_00952) csrA 959341..959526 (+) 186 WP_005972168.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38366.04 Da        Isoelectric Point: 4.9541

>NTDB_id=1145344 DAQ1742_RS04325 WP_035340172.1 954613..955689(+) (recA) [Dickeya aquatica strain 174/2]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTYGELVDLGVKFKLIEKAGAWYSYNGDKIGQGKANACNFLKENTTICAEL
DKKLRELLLNKGNELVPTVAGDVAEYNAEAGSDVNDDF

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=1145344 DAQ1742_RS04325 WP_035340172.1 954613..955689(+) (recA) [Dickeya aquatica strain 174/2]
ATGGCTATTGATGAGAACAAACAAAAGGCTCTGGCGGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGTTCTAT
CATGCGTTTGGGTGAAGACCGCTCAATGGATGTTGAAACTATCTCTACGGGTTCTTTGTCGCTGGATATCGCTTTGGGCG
TGGGCGGTCTGCCGATGGGACGTATTGTTGAGATTTATGGCCCAGAGTCTTCGGGGAAAACAACGCTGACCTTGCAGGTT
ATTGCGGCTGCCCAGCGTAAAGGCAAAACCTGCGCGTTTATTGATGCAGAACATGCGCTTGATCCTATCTATGCGAAAAA
ACTGGGCGTAGACATCGATAATCTATTGTGTTCTCAGCCAGATACCGGTGAGCAGGCGTTGGAAATCTGTGATGCGCTGG
CTCGCTCCGGTGCCGTGGATGTCATTATTGTTGACTCCGTCGCAGCGCTGACACCGAAAGCGGAAATTGAGGGTGAAATT
GGTGACTCTCACATGGGGCTGGCAGCACGCATGATGAGTCAGGCAATGCGTAAACTTGCCGGGAATCTTAAACAGTCCAA
TACGTTACTGATTTTTATCAACCAGATCCGCATGAAGATCGGGGTGATGTTTGGTAATCCTGAAACCACGACCGGTGGGA
ATGCGTTGAAGTTCTATGCTTCCGTACGTCTTGATATCCGCCGCATTGGTGCCATCAAGGAAGGGGAAGAGGTTGTTGGC
AGTGAAACCCGCGTCAAAGTGGTGAAAAACAAAGTCGCCGCCCCGTTCAAACAGGCGGAGTTCCAGATTCTGTACGGTGA
AGGGATTAACACTTACGGTGAGCTGGTTGATCTTGGCGTTAAGTTCAAGCTGATTGAAAAAGCCGGTGCCTGGTACAGCT
ATAATGGTGACAAAATAGGTCAGGGTAAGGCGAATGCCTGTAATTTCTTGAAAGAGAACACGACTATTTGTGCTGAGCTT
GATAAAAAATTACGAGAGCTGTTGCTAAACAAAGGTAATGAGCTGGTACCGACTGTCGCTGGTGATGTGGCTGAATACAA
TGCAGAAGCAGGTAGCGACGTTAATGATGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A375A7P2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.521

97.486

0.804
  recA Vibrio cholerae strain A1552

82.521

97.486

0.804
  recA Pseudomonas stutzeri DSM 10701

72.965

96.089

0.701
  recA Acinetobacter baylyi ADP1

71.137

95.81

0.682
  recA Acinetobacter baumannii D1279779

73.03

92.179

0.673
  recA Glaesserella parasuis strain SC1401

69.527

94.413

0.656
  recA Neisseria gonorrhoeae MS11

69.632

91.061

0.634
  recA Neisseria gonorrhoeae MS11

69.632

91.061

0.634
  recA Neisseria gonorrhoeae strain FA1090

69.632

91.061

0.634
  recA Ralstonia pseudosolanacearum GMI1000

70.74

86.872

0.615
  recA Streptococcus mitis NCTC 12261

58.056

100

0.584
  recA Streptococcus mitis SK321

58.056

100

0.584
  recA Helicobacter pylori strain NCTC11637

60.947

94.413

0.575
  recA Helicobacter pylori 26695

60.651

94.413

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.346

90.503

0.564
  recA Streptococcus pneumoniae R6

62.539

90.223

0.564
  recA Streptococcus pneumoniae TIGR4

62.539

90.223

0.564
  recA Streptococcus pneumoniae D39

62.539

90.223

0.564
  recA Streptococcus pneumoniae Rx1

62.539

90.223

0.564
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

89.665

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

90.782

0.559
  recA Streptococcus mutans UA159

61.538

90.782

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.701

93.575

0.559
  recA Lactococcus lactis subsp. cremoris KW2

61.61

90.223

0.556
  recA Streptococcus pyogenes NZ131

60.923

90.782

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.896

91.061

0.536

Multiple sequence alignment