Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DXE33_RS06560 Genome accession   NZ_LT615228
Coordinates   1273403..1274494 (-) Length   363 a.a.
NCBI ID   WP_114639180.1    Uniprot ID   -
Organism   Polynucleobacter necessarius isolate PPGSP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1268403..1279494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE33_RS06530 moaC 1268654..1269130 (+) 477 WP_114639752.1 cyclic pyranopterin monophosphate synthase MoaC -
  DXE33_RS06535 - 1269198..1269722 (-) 525 WP_269460030.1 pilin -
  DXE33_RS06540 - 1269828..1270535 (-) 708 WP_114639177.1 TerC family protein -
  DXE33_RS06545 sucD 1270612..1271505 (-) 894 WP_114639178.1 succinate--CoA ligase subunit alpha -
  DXE33_RS06550 sucC 1271521..1272690 (-) 1170 WP_114639179.1 ADP-forming succinate--CoA ligase subunit beta -
  DXE33_RS06555 recX 1272879..1273340 (-) 462 WP_231970426.1 recombination regulator RecX -
  DXE33_RS06560 recA 1273403..1274494 (-) 1092 WP_114639180.1 recombinase RecA Machinery gene
  DXE33_RS06575 - 1275201..1276070 (-) 870 WP_114639183.1 tetratricopeptide repeat protein -
  DXE33_RS06580 - 1276123..1276677 (-) 555 WP_114639184.1 DUF2878 domain-containing protein -
  DXE33_RS06590 - 1277139..1277720 (+) 582 WP_114639185.1 hypothetical protein -
  DXE33_RS09670 - 1277715..1277867 (-) 153 WP_174222297.1 hypothetical protein -
  DXE33_RS06595 - 1277908..1278939 (-) 1032 WP_114639186.1 tyrosine-type recombinase/integrase -
  DXE33_RS06600 - 1279010..1279450 (-) 441 WP_114639187.1 DUF6641 family protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38923.46 Da        Isoelectric Point: 4.7766

>NTDB_id=1145338 DXE33_RS06560 WP_114639180.1 1273403..1274494(-) (recA) [Polynucleobacter necessarius isolate PPGSP1]
MALDDKKKSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVEKSGSWYSYNGDRIGQGKDN
VRDFLKENPEIAKDIEAKIREKLGVKVGSAVVTDVLSEEEEVE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=1145338 DXE33_RS06560 WP_114639180.1 1273403..1274494(-) (recA) [Polynucleobacter necessarius isolate PPGSP1]
ATGGCCTTAGATGATAAAAAAAAGTCAGCATCCTCAGAATTTGAGGGGATGAGTGGAGACAAGCAAAAGGCGTTAACGGC
AGCGTTAGCTCAAATTGAGAAGCAATTTGGCAAAGGCTCAATCATGCGATTGGGTGATGCCGAGATTAGTCAAGATATTC
AAGTGGTATCAAGCGGTTCACTCGGTCTAGATATTGCTTTGGGGGTTGGTGGTCTTGCGCGTGGTCGCGTAATTGAAATC
TATGGCCCAGAATCATCCGGTAAAACTACATTAACTTTGCACGCTATTGCGGAAATGCAAAAGCTTGGCGGCACTTGCGC
CTTTATTGATGCTGAACATGCTTTAGATGTTCAGTACGCATCTCGTTTGGGTGTTGATGTTAATAATTTATTAATCTCTC
AACCGGATACCGGTGAGCAAGCTTTAGAAATTGCAGATGCCTTGGTGCGTTCTGGTTCAATCGACTTGATCGTGATTGAC
TCAGTAGCAGCTTTGGTTCCGAAAGCTGAGATTGAAGGCGATATGGGCGATTCATTGCCGGGCTTGCAGGCTCGTTTGAT
GAGCCAAGCTTTGCGTAAGTTAACTGGCGCAATTAAGCGTACCAACACTACCGTGATCTTTATTAACCAGATTCGTATGA
AGATTGGTGTGATGTTTGGTTCCCCAGAAACTACTACTGGCGGCAATGCACTCAAGTTCTATGCTTCTATGCGTTTAGAT
ATTCGCCGCATCGGCAGCATTAAAAAGGGTGACGAGGTTGTTGGAAATGAAACACGCGTAAAAGTGGTTAAAAACAAGGT
TTCCCCTCCGTTCCGTGAGGCTATTTTTGACATTATGTATGGCGCTGGCATTTCTAGAGAAGGCGAAATCATTGATATGG
GCGTTGAAGCCGATATCGTGGAAAAGTCTGGTTCCTGGTATAGCTATAACGGTGATCGTATTGGTCAAGGCAAAGACAAT
GTGCGCGATTTCCTGAAGGAGAATCCTGAGATCGCCAAAGATATAGAAGCGAAGATTCGTGAAAAACTTGGTGTTAAGGT
TGGCTCCGCTGTTGTGACAGATGTGCTGAGTGAGGAAGAGGAAGTCGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.78

98.898

0.799
  recA Neisseria gonorrhoeae MS11

74.018

91.185

0.675
  recA Neisseria gonorrhoeae MS11

74.018

91.185

0.675
  recA Neisseria gonorrhoeae strain FA1090

74.018

91.185

0.675
  recA Acinetobacter baylyi ADP1

70.058

94.766

0.664
  recA Acinetobacter baumannii D1279779

70.058

94.766

0.664
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.012

95.592

0.65
  recA Vibrio cholerae strain A1552

68.012

95.592

0.65
  recA Pseudomonas stutzeri DSM 10701

69.617

93.388

0.65
  recA Glaesserella parasuis strain SC1401

69.486

91.185

0.634
  recA Bacillus subtilis subsp. subtilis str. 168

68.098

89.807

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.912

94.215

0.612
  recA Helicobacter pylori 26695

67.178

89.807

0.603
  recA Helicobacter pylori strain NCTC11637

66.871

89.807

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.559

91.185

0.598
  recA Streptococcus pneumoniae D39

60.714

92.562

0.562
  recA Streptococcus pneumoniae Rx1

60.714

92.562

0.562
  recA Streptococcus pneumoniae R6

60.714

92.562

0.562
  recA Streptococcus pneumoniae TIGR4

60.714

92.562

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

62.27

89.807

0.559
  recA Streptococcus pyogenes NZ131

58.43

94.766

0.554
  recA Streptococcus mitis NCTC 12261

60.606

90.909

0.551
  recA Streptococcus mitis SK321

60.303

90.909

0.548
  recA Streptococcus mutans UA159

60

90.909

0.545
  recA Lactococcus lactis subsp. cremoris KW2

59.697

90.909

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

88.43

0.537

Multiple sequence alignment