Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DXE27_RS02190 Genome accession   NZ_LT615227
Coordinates   432224..433309 (-) Length   361 a.a.
NCBI ID   WP_415064458.1    Uniprot ID   -
Organism   Polynucleobacter necessarius isolate PPGSP8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 427224..438309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE27_RS02160 - 427433..427876 (-) 444 WP_128112727.1 tetratricopeptide repeat protein -
  DXE27_RS02165 - 427974..428486 (-) 513 WP_128112728.1 pilin -
  DXE27_RS02170 - 428606..429313 (-) 708 WP_128112729.1 TerC family protein -
  DXE27_RS02175 sucD 429413..430306 (-) 894 WP_128112730.1 succinate--CoA ligase subunit alpha -
  DXE27_RS02180 sucC 430322..431491 (-) 1170 WP_128112731.1 ADP-forming succinate--CoA ligase subunit beta -
  DXE27_RS02185 recX 431685..432206 (-) 522 WP_128112732.1 recombination regulator RecX -
  DXE27_RS02190 recA 432224..433309 (-) 1086 WP_415064458.1 recombinase RecA Machinery gene
  DXE27_RS02195 - 433435..433950 (-) 516 WP_197712281.1 DUF2878 domain-containing protein -
  DXE27_RS09040 - 434181..434363 (-) 183 WP_197712282.1 hypothetical protein -
  DXE27_RS09045 - 434369..434566 (-) 198 WP_197712283.1 hypothetical protein -
  DXE27_RS02210 - 434724..434987 (+) 264 WP_128112734.1 DUF6150 family protein -
  DXE27_RS02215 - 435003..435614 (+) 612 WP_128112735.1 MOSC domain-containing protein -
  DXE27_RS02220 - 435667..437339 (-) 1673 Protein_477 MFS transporter -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38724.23 Da        Isoelectric Point: 4.8286

>NTDB_id=1145320 DXE27_RS02190 WP_415064458.1 432224..433309(-) (recA) [Polynucleobacter necessarius isolate PPGSP8]
MDNKKQSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEIYG
PESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVIDSV
AALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLDIR
RIGSIKKGDEVVGNETRVKVVKNKVCPPFREAIFDIMYGAGISREGEIIDMGVEADLVEKSGSWYSYNGDRIGQGKDNVR
EFLKENPAIAKDIEVKIREKLGVKSGSAVVADVLSEEEEVE

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=1145320 DXE27_RS02190 WP_415064458.1 432224..433309(-) (recA) [Polynucleobacter necessarius isolate PPGSP8]
TTGGATAATAAAAAGCAATCCGCCTCTTCAGAATTTGAAGGAATGAGTGGAGACAAACAAAAAGCATTAACTGCAGCGCT
GGCACAAATTGAGAAACAGTTTGGCAAAGGTTCAATCATGAGATTGGGCGATGCCGAAATTAGTCAAGATATTCAGGTGG
TTTCTAGCGGTTCACTCGGATTAGATATCGCTCTTGGAGTTGGCGGCCTTGCGCGTGGTCGCGTCATTGAGATCTACGGC
CCAGAATCTTCAGGTAAAACAACATTGACCTTGCACGCGATTGCAGAAATGCAAAAGCTTGGTGGGACTTGCGCATTTAT
TGATGCTGAACATGCGTTGGATGTGCAGTACGCATCACGCCTCGGTGTTGATGTAAATAATTTGTTGATCTCCCAACCAG
ATACTGGTGAGCAAGCTTTAGAAATTGCGGATGCATTAGTGCGCTCAGGCTCGATTGATCTGATCGTGATCGACTCAGTT
GCCGCTTTGGTTCCAAGGGCTGAGATCGAAGGCGATATGGGCGATTCTTTGCCAGGCTTGCAAGCACGTTTGATGAGCCA
AGCCTTACGTAAGTTGACTGGTGCTATCAAGCGCACAAACACCACTGTGATCTTCATTAACCAAATTCGTATGAAGATTG
GTGTGATGTTTGGATCCCCTGAAACCACTACTGGTGGTAATGCACTTAAGTTCTACGCTTCTATGCGCTTAGACATCCGT
CGTATCGGTAGTATCAAAAAAGGCGATGAGGTTGTTGGTAATGAGACTCGCGTGAAGGTTGTGAAGAACAAAGTGTGTCC
TCCGTTCCGCGAAGCTATCTTTGACATCATGTACGGTGCTGGCATTTCTAGAGAGGGCGAAATCATTGATATGGGCGTTG
AAGCTGACCTCGTTGAAAAGTCAGGCTCTTGGTATAGCTACAACGGTGATCGTATTGGTCAAGGCAAAGATAATGTGCGC
GAGTTCCTAAAAGAGAATCCAGCCATTGCCAAAGACATCGAAGTAAAGATTCGTGAGAAATTGGGTGTGAAGTCTGGTTC
AGCAGTGGTTGCTGATGTGCTGAGCGAGGAAGAAGAAGTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.223

99.446

0.798
  recA Neisseria gonorrhoeae MS11

73.03

91.413

0.668
  recA Neisseria gonorrhoeae MS11

73.03

91.413

0.668
  recA Neisseria gonorrhoeae strain FA1090

73.03

91.413

0.668
  recA Acinetobacter baylyi ADP1

69.477

95.291

0.662
  recA Acinetobacter baumannii D1279779

69.477

95.291

0.662
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.723

96.122

0.651
  recA Vibrio cholerae strain A1552

67.723

96.122

0.651
  recA Pseudomonas stutzeri DSM 10701

70.27

92.244

0.648
  recA Glaesserella parasuis strain SC1401

68.769

92.244

0.634
  recA Bacillus subtilis subsp. subtilis str. 168

66.566

91.967

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.035

94.737

0.607
  recA Helicobacter pylori 26695

66.871

90.305

0.604
  recA Helicobacter pylori strain NCTC11637

66.564

90.305

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.653

91.69

0.593
  recA Streptococcus mitis SK321

58.192

98.061

0.571
  recA Streptococcus pneumoniae D39

60.417

93.075

0.562
  recA Streptococcus pneumoniae Rx1

60.417

93.075

0.562
  recA Streptococcus pneumoniae R6

60.417

93.075

0.562
  recA Streptococcus pneumoniae TIGR4

60.417

93.075

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

62.27

90.305

0.562
  recA Streptococcus pyogenes NZ131

58.43

95.291

0.557
  recA Streptococcus mitis NCTC 12261

59.524

93.075

0.554
  recA Lactococcus lactis subsp. cremoris KW2

58.631

93.075

0.546
  recA Streptococcus mutans UA159

59.697

91.413

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

88.92

0.537

Multiple sequence alignment