Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DXE37_RS01420 Genome accession   NZ_LT606951
Coordinates   258104..259195 (+) Length   363 a.a.
NCBI ID   WP_114637500.1    Uniprot ID   -
Organism   Polynucleobacter necessarius isolate PPGSP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 253104..264195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE37_RS11065 - 254900..255223 (-) 324 WP_197713036.1 MOSC domain-containing protein -
  DXE37_RS11070 - 255230..255382 (-) 153 WP_197713037.1 hypothetical protein -
  DXE37_RS01390 - 255399..255641 (-) 243 WP_114636326.1 hypothetical protein -
  DXE37_RS01395 - 255880..256527 (+) 648 WP_114636327.1 sterol desaturase family protein -
  DXE37_RS01400 - 256524..256859 (+) 336 WP_114636328.1 hypothetical protein -
  DXE37_RS01405 - 256901..257266 (+) 366 WP_197713038.1 hypothetical protein -
  DXE37_RS11995 - 257482..257982 (+) 501 Protein_300 DUF2878 domain-containing protein -
  DXE37_RS01420 recA 258104..259195 (+) 1092 WP_114637500.1 recombinase RecA Machinery gene
  DXE37_RS01425 - 259200..259718 (+) 519 WP_114636330.1 RecX family transcriptional regulator -
  DXE37_RS01430 sucC 259907..261076 (+) 1170 WP_114636331.1 ADP-forming succinate--CoA ligase subunit beta -
  DXE37_RS01435 sucD 261092..261985 (+) 894 WP_114636332.1 succinate--CoA ligase subunit alpha -
  DXE37_RS01440 - 262099..262806 (+) 708 WP_114636333.1 TerC family protein -
  DXE37_RS01445 - 262913..263455 (+) 543 WP_269460255.1 pilin -
  DXE37_RS01450 - 263653..263997 (+) 345 WP_162786123.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38981.50 Da        Isoelectric Point: 4.7766

>NTDB_id=1145224 DXE37_RS01420 WP_114637500.1 258104..259195(+) (recA) [Polynucleobacter necessarius isolate PPGSP6]
MALDDKRKSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLDVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADLVEKSGSWYSYNGDRIGQGKDN
VREFLKENPAIAKDIEAKIREKLGIKTGSAVVTDVLSEEEEVE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=1145224 DXE37_RS01420 WP_114637500.1 258104..259195(+) (recA) [Polynucleobacter necessarius isolate PPGSP6]
ATGGCCTTGGATGACAAAAGAAAATCAGCCTCTTCAGAGTTTGAAGGAATGAGCGGAGACAAGCAAAAAGCATTAACAGC
AGCGCTGGCGCAAATCGAGAAGCAATTCGGCAAAGGCTCAATCATGAGATTGGGCGATGCTGAAATTAGTCAAGATATCC
AGGTGGTATCGAGCGGTTCCCTCGGTTTGGATATCGCTCTTGGAGTTGGCGGTCTTGCACGCGGGCGCGTGATTGAAATC
TACGGTCCAGAATCTTCTGGCAAAACAACCCTGACATTACACGCGATTGCTGAAATGCAAAAGCTTGGCGGTACTTGTGC
ATTTATTGATGCTGAGCATGCGTTAGATGTGCAGTATGCGTCCCGCCTCGATGTTGACGTAAATAATCTTTTGATTTCCC
AACCAGATACTGGCGAACAAGCCTTAGAAATTGCTGATGCGTTAGTGCGCTCAGGCTCTATCGATTTGATCGTGATTGAC
TCAGTTGCTGCCTTGGTTCCGAAGGCTGAGATTGAGGGTGATATGGGCGATTCTTTACCAGGCTTACAAGCTCGTTTGAT
GAGTCAAGCTTTGCGTAAGTTGACTGGTGCTATCAAACGTACCAACACTACAGTGATCTTTATTAATCAGATTCGCATGA
AGATTGGTGTGATGTTTGGGTCTCCCGAAACTACTACAGGCGGTAATGCTCTGAAGTTCTACGCTTCTATGCGTTTGGAT
ATTCGTCGTATTGGTAGCATTAAAAAAGGTGATGAGGTTGTTGGTAACGAAACTCGTGTGAAGGTTGTGAAGAATAAAGT
TTCACCTCCATTCCGTGAGGCCATCTTTGACATTATGTACGGTGCTGGTATTTCAAGAGAAGGTGAAATTATTGATATGG
GTGTCGAAGCTGACCTCGTGGAAAAGTCGGGCTCTTGGTATAGCTATAACGGCGATCGCATTGGTCAAGGTAAAGATAAT
GTGCGTGAGTTCCTAAAAGAAAACCCAGCTATTGCCAAAGATATTGAAGCAAAGATTCGTGAGAAATTAGGTATTAAGAC
TGGTTCAGCAGTGGTGACTGATGTGCTGAGCGAGGAAGAAGAAGTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.944

98.898

0.791
  recA Neisseria gonorrhoeae MS11

73.03

90.909

0.664
  recA Neisseria gonorrhoeae MS11

73.03

90.909

0.664
  recA Neisseria gonorrhoeae strain FA1090

73.03

90.909

0.664
  recA Acinetobacter baumannii D1279779

69.767

94.766

0.661
  recA Acinetobacter baylyi ADP1

69.477

94.766

0.658
  recA Pseudomonas stutzeri DSM 10701

69.027

93.388

0.645
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.435

95.592

0.645
  recA Vibrio cholerae strain A1552

67.435

95.592

0.645
  recA Glaesserella parasuis strain SC1401

68.882

91.185

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

66.566

91.46

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.327

94.215

0.606
  recA Helicobacter pylori 26695

66.871

89.807

0.601
  recA Helicobacter pylori strain NCTC11637

66.564

89.807

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.955

91.185

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

61.963

89.807

0.556
  recA Streptococcus pneumoniae D39

59.821

92.562

0.554
  recA Streptococcus pneumoniae Rx1

59.821

92.562

0.554
  recA Streptococcus pneumoniae R6

59.821

92.562

0.554
  recA Streptococcus pneumoniae TIGR4

59.821

92.562

0.554
  recA Streptococcus mutans UA159

57.971

95.041

0.551
  recA Streptococcus mitis NCTC 12261

57.471

95.868

0.551
  recA Streptococcus mitis SK321

59.159

91.736

0.543
  recA Lactococcus lactis subsp. cremoris KW2

59.091

90.909

0.537
  recA Streptococcus pyogenes NZ131

58.967

90.634

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

88.43

0.529

Multiple sequence alignment