Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BQ1619_RS07185 Genome accession   NZ_LT606950
Coordinates   1293764..1294855 (-) Length   363 a.a.
NCBI ID   WP_114663132.1    Uniprot ID   -
Organism   Polynucleobacter necessarius isolate PPGSP4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1288764..1299855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ1619_RS07155 moaC 1288967..1289444 (+) 478 Protein_1514 cyclic pyranopterin monophosphate synthase MoaC -
  BQ1619_RS07160 - 1289614..1289952 (-) 339 WP_174222103.1 pilin -
  BQ1619_RS07165 - 1290163..1290867 (-) 705 WP_114663126.1 TerC family protein -
  BQ1619_RS07170 sucD 1290963..1291856 (-) 894 WP_114663128.1 succinate--CoA ligase subunit alpha -
  BQ1619_RS07175 sucC 1291872..1293041 (-) 1170 WP_114663130.1 ADP-forming succinate--CoA ligase subunit beta -
  BQ1619_RS07180 - 1293229..1293609 (-) 381 WP_231968586.1 regulatory protein RecX -
  BQ1619_RS07185 recA 1293764..1294855 (-) 1092 WP_114663132.1 recombinase RecA Machinery gene
  BQ1619_RS10740 - 1295076..1295303 (-) 228 WP_415066157.1 DUF2878 family protein -
  BQ1619_RS10745 - 1295318..1295455 (-) 138 WP_415066159.1 hypothetical protein -
  BQ1619_RS07200 - 1295713..1296033 (+) 321 WP_114663134.1 DUF6150 family protein -
  BQ1619_RS07205 - 1296048..1296626 (+) 579 WP_197711912.1 MOSC domain-containing protein -
  BQ1619_RS07210 - 1296711..1298371 (-) 1661 Protein_1525 MFS transporter -
  BQ1619_RS10750 - 1298618..1298836 (+) 219 WP_415066162.1 gamma-glutamyltransferase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38733.31 Da        Isoelectric Point: 4.9767

>NTDB_id=1145214 BQ1619_RS07185 WP_114663132.1 1293764..1294855(-) (recA) [Polynucleobacter necessarius isolate PPGSP4]
MALDEKRKSVSSEFDGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAVAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFGIMYGAGISREGEIIDMGVEAGIVEKSGSWYSYNGDRIGQGKDN
VRDFLKENPDIAKDIEARIREKLGVKVGSAVVTDVLSEEEEVG

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=1145214 BQ1619_RS07185 WP_114663132.1 1293764..1294855(-) (recA) [Polynucleobacter necessarius isolate PPGSP4]
ATGGCCTTGGATGAAAAAAGAAAATCAGTTTCATCAGAGTTTGATGGAATGAGCGGAGACAAGCAAAAAGCGTTAACAGC
AGCCTTGGCGCAGATTGAAAAGCAATTTGGCAAGGGCTCAATCATGCGATTGGGTGATGCTGAAATTAGCCAAGACATAC
AAGTGGTATCGAGTGGTTCGTTGGGCTTGGATATCGCCCTGGGGGTTGGTGGCTTGGCTCGTGGTCGCGTCATTGAAATT
TATGGCCCAGAGTCATCGGGTAAAACGACATTAACCTTGCATGCAGTTGCTGAGATGCAAAAGCTTGGCGGTACTTGTGC
ATTTATTGATGCTGAACATGCTTTAGATGTTCAGTACGCAGGCAAGCTTGGCGTGGACGTCAATAATCTATTGATTTCTC
AACCAGACACTGGTGAGCAAGCTTTAGAGATTGCAGATGCATTAGTGCGTTCTGGTTCAATTGACCTGATCGTCATTGAC
TCTGTAGCTGCCTTAGTTCCAAAGGCTGAAATTGAAGGTGACATGGGTGATTCCCTGCCGGGTTTGCAAGCGCGTTTAAT
GAGCCAAGCTTTGCGTAAATTAACTGGCGCTATTAAGCGTACCAATACAACAGTGATCTTTATCAACCAAATTCGCATGA
AGATTGGTGTGATGTTTGGTTCACCAGAAACCACTACCGGTGGTAATGCGCTGAAGTTCTATGCCTCAATGCGTTTGGAT
ATTCGCCGTATAGGTAGTATCAAAAAGGGCGATGAAGTAGTTGGTAATGAAACGCGCGTTAAGGTTGTGAAAAACAAGGT
TTCTCCACCGTTCCGCGAAGCGATTTTTGGCATCATGTATGGGGCCGGCATCTCGAGAGAGGGCGAGATTATTGACATGG
GTGTCGAGGCGGGCATCGTTGAGAAGTCAGGATCTTGGTACAGTTATAACGGCGATCGTATTGGTCAAGGCAAAGATAAT
GTGCGCGACTTCTTGAAAGAGAACCCAGATATTGCTAAAGATATTGAGGCAAGGATTCGTGAGAAGTTGGGTGTCAAAGT
TGGTTCTGCAGTAGTGACCGACGTCTTGAGCGAGGAAGAGGAAGTAGGATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.319

95.041

0.782
  recA Neisseria gonorrhoeae MS11

73.414

91.185

0.669
  recA Neisseria gonorrhoeae MS11

73.414

91.185

0.669
  recA Neisseria gonorrhoeae strain FA1090

73.414

91.185

0.669
  recA Acinetobacter baylyi ADP1

70.058

94.766

0.664
  recA Acinetobacter baumannii D1279779

69.767

94.766

0.661
  recA Pseudomonas stutzeri DSM 10701

69.912

93.388

0.653
  recA Vibrio cholerae strain A1552

70.642

90.083

0.636
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.642

90.083

0.636
  recA Glaesserella parasuis strain SC1401

68.882

91.185

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

67.791

89.807

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.06

91.46

0.595
  recA Helicobacter pylori 26695

65.644

89.807

0.59
  recA Helicobacter pylori strain NCTC11637

65.337

89.807

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.35

91.185

0.587
  recA Streptococcus pneumoniae R6

58.689

96.694

0.567
  recA Streptococcus pneumoniae Rx1

58.689

96.694

0.567
  recA Streptococcus pneumoniae D39

58.689

96.694

0.567
  recA Streptococcus pneumoniae TIGR4

58.689

96.694

0.567
  recA Streptococcus mitis NCTC 12261

58.79

95.592

0.562
  recA Streptococcus mutans UA159

58.841

95.041

0.559
  recA Streptococcus mitis SK321

58.501

95.592

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

61.963

89.807

0.556
  recA Lactococcus lactis subsp. cremoris KW2

58.48

94.215

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.459

91.736

0.545
  recA Streptococcus pyogenes NZ131

59.271

90.634

0.537

Multiple sequence alignment