Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DXE35_RS07765 Genome accession   NZ_LT606949
Coordinates   1434932..1436023 (-) Length   363 a.a.
NCBI ID   WP_114690127.1    Uniprot ID   -
Organism   Polynucleobacter necessarius isolate PPGSP7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1429932..1441023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE35_RS09330 - 1430393..1430650 (-) 258 WP_162785004.1 alpha/beta fold hydrolase -
  DXE35_RS07740 - 1430692..1431210 (-) 519 WP_114690122.1 pilin -
  DXE35_RS07745 - 1431328..1432035 (-) 708 WP_114690123.1 TerC family protein -
  DXE35_RS07750 sucD 1432127..1433020 (-) 894 WP_114690124.1 succinate--CoA ligase subunit alpha -
  DXE35_RS07755 sucC 1433036..1434205 (-) 1170 WP_114690125.1 ADP-forming succinate--CoA ligase subunit beta -
  DXE35_RS07760 recX 1434394..1434915 (-) 522 WP_114690126.1 recombination regulator RecX -
  DXE35_RS07765 recA 1434932..1436023 (-) 1092 WP_114690127.1 recombinase RecA Machinery gene
  DXE35_RS07775 - 1436511..1439414 (-) 2904 Protein_1657 FAD-binding and (Fe-S)-binding domain-containing protein -
  DXE35_RS09335 - 1439520..1439693 (-) 174 WP_162785005.1 hypothetical protein -
  DXE35_RS09860 - 1439776..1440030 (-) 255 WP_197714022.1 hypothetical protein -
  DXE35_RS07785 - 1440265..1440741 (+) 477 WP_197714023.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38920.50 Da        Isoelectric Point: 4.9095

>NTDB_id=1145203 DXE35_RS07765 WP_114690127.1 1434932..1436023(-) (recA) [Polynucleobacter necessarius isolate PPGSP7]
MALDDKRKSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEIGQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVHNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVFGNETRVKVVKNKVSPPFREAIFDIMYGTGISREGEIIDMGVEADLVEKSGSWYSYNGDRIGQGKDN
VREFLKENPAIAKDIEAKIREKLGVKVGSAVVTDVLSEEEEVE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=1145203 DXE35_RS07765 WP_114690127.1 1434932..1436023(-) (recA) [Polynucleobacter necessarius isolate PPGSP7]
ATGGCCTTGGATGACAAAAGAAAATCAGCCTCTTCAGAATTTGAAGGAATGAGTGGAGACAAGCAAAAAGCATTAACAGC
CGCACTGGCGCAAATTGAGAAGCAATTTGGTAAAGGCTCAATCATGCGCTTGGGCGATGCTGAAATTGGTCAAGATATTC
AAGTGGTATCTAGCGGTTCACTCGGATTAGATATCGCTCTTGGGGTTGGCGGTCTTGCGCGTGGTCGCGTCATTGAAATC
TACGGCCCAGAATCTTCCGGTAAAACAACACTCACATTGCATGCGATTGCAGAGATGCAAAAGCTCGGCGGCACTTGCGC
ATTTATTGATGCCGAACATGCTTTAGATGTTCAGTACGCTGGCAAGCTTGGTGTCGACGTTCATAATCTGTTGATCTCTC
AACCAGACACTGGTGAGCAAGCATTAGAAATTGCTGACGCACTCGTGCGCTCAGGCTCTATTGATTTAATTGTGATTGAC
TCTGTCGCAGCCTTAGTACCTAAGGCCGAGATCGAGGGCGATATGGGTGATTCATTGCCTGGCTTACAGGCTCGTTTGAT
GAGCCAAGCTTTGCGTAAGTTGACTGGCGCAATCAAGCGCACCAATACCACTGTGATCTTTATTAACCAGATTCGCATGA
AGATTGGTGTGATGTTTGGTTCACCAGAAACCACTACTGGCGGTAATGCTCTGAAGTTCTACGCCTCTATGCGCTTAGAC
ATTCGCCGTATTGGTAGCATCAAAAAAGGTGATGAGGTTTTTGGTAACGAAACTCGCGTGAAAGTGGTGAAGAACAAAGT
TTCTCCTCCATTCCGCGAAGCCATCTTTGACATCATGTATGGCACTGGTATTTCTAGAGAAGGCGAAATCATTGATATGG
GAGTTGAAGCTGATCTCGTAGAAAAGTCAGGATCTTGGTATAGCTATAACGGCGATCGCATTGGCCAAGGCAAAGACAAT
GTGCGCGAGTTCTTAAAAGAGAATCCAGCCATTGCTAAGGACATCGAAGCCAAAATTCGTGAGAAATTAGGTGTTAAGGT
TGGCTCAGCAGTAGTCACTGATGTACTGAGCGAGGAAGAGGAAGTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.223

98.898

0.793
  recA Neisseria gonorrhoeae MS11

73.716

91.185

0.672
  recA Neisseria gonorrhoeae MS11

73.716

91.185

0.672
  recA Neisseria gonorrhoeae strain FA1090

73.716

91.185

0.672
  recA Acinetobacter baylyi ADP1

70.058

94.766

0.664
  recA Acinetobacter baumannii D1279779

69.767

94.766

0.661
  recA Pseudomonas stutzeri DSM 10701

69.912

93.388

0.653
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.723

95.592

0.647
  recA Vibrio cholerae strain A1552

67.723

95.592

0.647
  recA Glaesserella parasuis strain SC1401

69.184

91.185

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

68.098

89.807

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.912

94.215

0.612
  recA Helicobacter pylori 26695

66.871

89.807

0.601
  recA Helicobacter pylori strain NCTC11637

66.564

89.807

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.955

91.185

0.592
  recA Streptococcus mutans UA159

58.671

95.317

0.559
  recA Streptococcus pneumoniae D39

60.237

92.837

0.559
  recA Streptococcus pneumoniae Rx1

60.237

92.837

0.559
  recA Streptococcus pneumoniae R6

60.237

92.837

0.559
  recA Streptococcus pneumoniae TIGR4

60.237

92.837

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

61.963

89.807

0.556
  recA Streptococcus mitis NCTC 12261

60.121

91.185

0.548
  recA Streptococcus mitis SK321

59.819

91.185

0.545
  recA Streptococcus pyogenes NZ131

59.697

90.909

0.543
  recA Lactococcus lactis subsp. cremoris KW2

59.394

90.909

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

88.43

0.529

Multiple sequence alignment