Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PPRCHA0_RS06510 | Genome accession | NZ_LS999205 |
| Coordinates | 1421669..1422721 (+) | Length | 350 a.a. |
| NCBI ID | WP_011059579.1 | Uniprot ID | A0A2C9EHI1 |
| Organism | Pseudomonas protegens CHA0 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1386313..1420915 | 1421669..1422721 | flank | 754 |
Gene organization within MGE regions
Location: 1386313..1422721
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PPRCHA0_RS06305 (PPRCHA0_1213) | - | 1386313..1387173 (+) | 861 | WP_011059553.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| PPRCHA0_RS06310 (PPRCHA0_1214) | rpoS | 1387280..1388287 (+) | 1008 | WP_011059554.1 | RNA polymerase sigma factor RpoS | - |
| PPRCHA0_RS06315 (PPRCHA0_1215) | fdxA | 1388799..1389122 (-) | 324 | WP_011059555.1 | ferredoxin FdxA | - |
| PPRCHA0_RS06320 (PPRCHA0_1216) | mutS | 1389266..1391845 (-) | 2580 | WP_011059556.1 | DNA mismatch repair protein MutS | - |
| PPRCHA0_RS06325 (PPRCHA0_1217) | - | 1392032..1392778 (+) | 747 | WP_041751977.1 | XRE family transcriptional regulator | - |
| PPRCHA0_RS06330 (PPRCHA0_1218) | - | 1393295..1393645 (+) | 351 | WP_011059558.1 | phage holin family protein | - |
| PPRCHA0_RS06335 (PPRCHA0_1219) | - | 1393734..1394255 (+) | 522 | WP_041751978.1 | hypothetical protein | - |
| PPRCHA0_RS06340 (PPRCHA0_1220) | - | 1394252..1394842 (+) | 591 | WP_041751979.1 | phage baseplate assembly protein V | - |
| PPRCHA0_RS06345 (PPRCHA0_1221) | - | 1394935..1395138 (+) | 204 | WP_015634348.1 | hypothetical protein | - |
| PPRCHA0_RS06350 (PPRCHA0_1222) | - | 1395143..1395469 (+) | 327 | WP_015634349.1 | GPW/gp25 family protein | - |
| PPRCHA0_RS06355 (PPRCHA0_1223) | - | 1395466..1396347 (+) | 882 | WP_015634350.1 | baseplate J/gp47 family protein | - |
| PPRCHA0_RS06360 (PPRCHA0_1224) | - | 1396349..1396954 (+) | 606 | WP_015634351.1 | phage tail protein I | - |
| PPRCHA0_RS06365 (PPRCHA0_1225) | - | 1396951..1398177 (+) | 1227 | WP_015634352.1 | phage tail protein | - |
| PPRCHA0_RS06370 (PPRCHA0_1226) | - | 1398177..1398947 (+) | 771 | WP_134532553.1 | hypothetical protein | - |
| PPRCHA0_RS06375 (PPRCHA0_1227) | - | 1398944..1399396 (+) | 453 | WP_134532557.1 | phage tail assembly chaperone | - |
| PPRCHA0_RS06380 (PPRCHA0_1228) | - | 1399498..1400664 (+) | 1167 | WP_015634354.1 | phage tail sheath family protein | - |
| PPRCHA0_RS06385 (PPRCHA0_1229) | - | 1400677..1401186 (+) | 510 | WP_015634355.1 | phage major tail tube protein | - |
| PPRCHA0_RS06390 (PPRCHA0_1230) | - | 1401196..1401501 (+) | 306 | WP_015634356.1 | phage tail assembly protein | - |
| PPRCHA0_RS06395 (PPRCHA0_1231) | - | 1401643..1404189 (+) | 2547 | WP_015634357.1 | phage tail tape measure protein | - |
| PPRCHA0_RS06400 (PPRCHA0_1232) | - | 1404199..1405044 (+) | 846 | WP_015634358.1 | phage tail protein | - |
| PPRCHA0_RS06405 (PPRCHA0_1233) | - | 1405019..1405225 (+) | 207 | WP_015634359.1 | tail protein X | - |
| PPRCHA0_RS06410 (PPRCHA0_1234) | - | 1405287..1406330 (+) | 1044 | WP_015634360.1 | phage late control D family protein | - |
| PPRCHA0_RS06415 (PPRCHA0_1235) | - | 1406381..1407517 (+) | 1137 | WP_015634361.1 | glycosyl hydrolase family 18 protein | - |
| PPRCHA0_RS06420 (PPRCHA0_1236) | - | 1407675..1408256 (+) | 582 | WP_015634362.1 | hypothetical protein | - |
| PPRCHA0_RS06425 (PPRCHA0_1237) | - | 1408253..1408435 (+) | 183 | WP_011059562.1 | DUF2635 domain-containing protein | - |
| PPRCHA0_RS06430 (PPRCHA0_1238) | - | 1408435..1409931 (+) | 1497 | WP_015634363.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| PPRCHA0_RS06435 (PPRCHA0_1239) | - | 1409998..1410345 (+) | 348 | WP_011059564.1 | phage tail tube protein | - |
| PPRCHA0_RS06440 (PPRCHA0_1240) | - | 1410342..1410638 (+) | 297 | WP_011059565.1 | phage tail assembly protein | - |
| PPRCHA0_RS06445 (PPRCHA0_1241) | - | 1410769..1412367 (+) | 1599 | WP_015634364.1 | hypothetical protein | - |
| PPRCHA0_RS06450 (PPRCHA0_1242) | - | 1412357..1413601 (+) | 1245 | WP_015634365.1 | DNA circularization protein | - |
| PPRCHA0_RS06455 (PPRCHA0_1243) | - | 1413605..1414645 (+) | 1041 | WP_015634366.1 | phage baseplate assembly protein | - |
| PPRCHA0_RS06460 (PPRCHA0_1244) | - | 1414755..1415261 (+) | 507 | WP_041751983.1 | phage baseplate assembly protein V | - |
| PPRCHA0_RS06465 (PPRCHA0_1245) | - | 1415264..1415662 (+) | 399 | WP_015634368.1 | phage GP46 family protein | - |
| PPRCHA0_RS06470 (PPRCHA0_1246) | - | 1415652..1416692 (+) | 1041 | WP_015634369.1 | baseplate J/gp47 family protein | - |
| PPRCHA0_RS06475 (PPRCHA0_1247) | - | 1416680..1417279 (+) | 600 | WP_011059572.1 | YmfQ family protein | - |
| PPRCHA0_RS06480 (PPRCHA0_1248) | - | 1417295..1418392 (+) | 1098 | WP_015634370.1 | phage tail protein | - |
| PPRCHA0_RS06485 (PPRCHA0_1249) | - | 1418389..1418766 (+) | 378 | WP_041116261.1 | phage tail assembly chaperone | - |
| PPRCHA0_RS06490 (PPRCHA0_1250) | - | 1418817..1419380 (+) | 564 | WP_015634371.1 | glycoside hydrolase family 19 protein | - |
| PPRCHA0_RS06495 (PPRCHA0_1251) | - | 1419489..1420004 (+) | 516 | WP_015634372.1 | hypothetical protein | - |
| PPRCHA0_RS06500 (PPRCHA0_1252) | - | 1420274..1420915 (+) | 642 | WP_041116265.1 | hypothetical protein | - |
| PPRCHA0_RS06505 (PPRCHA0_1253) | - | 1421085..1421585 (+) | 501 | WP_011059578.1 | CinA family protein | - |
| PPRCHA0_RS06510 (PPRCHA0_1254) | recA | 1421669..1422721 (+) | 1053 | WP_011059579.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37462.95 Da Isoelectric Point: 5.5108
>NTDB_id=1143426 PPRCHA0_RS06510 WP_011059579.1 1421669..1422721(+) (recA) [Pseudomonas protegens CHA0]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGNALEK
QIREKLLTASPDVKANPVKETEDDMADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGNALEK
QIREKLLTASPDVKANPVKETEDDMADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=1143426 PPRCHA0_RS06510 WP_011059579.1 1421669..1422721(+) (recA) [Pseudomonas protegens CHA0]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCCATTTCCACCGGCTCTCTGGGTCTGGACATTGCTCTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGCCCTGAGTCGTCCGGTAAAACTACCCTGACTCTGTCGGTTATTGCC
CAGGCGCAGAAAGCCGGTGCAACTTGTGCGTTCGTCGATGCCGAGCACGCACTGGATCCGGAATACGCCGGCAAGCTGGG
TGTGAATGTTGACGACCTGTTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGCAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTGGGCAGCGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGTGAAATCATCGATCTGGGCGTGCTGCACGGCTTCCTGGAGAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCGGAAATCGGCAACGCGCTGGAGAAG
CAGATCCGTGAAAAACTGCTGACTGCATCGCCAGACGTCAAAGCCAACCCGGTCAAAGAGACCGAAGACGATATGGCCGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCCATTTCCACCGGCTCTCTGGGTCTGGACATTGCTCTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGCCCTGAGTCGTCCGGTAAAACTACCCTGACTCTGTCGGTTATTGCC
CAGGCGCAGAAAGCCGGTGCAACTTGTGCGTTCGTCGATGCCGAGCACGCACTGGATCCGGAATACGCCGGCAAGCTGGG
TGTGAATGTTGACGACCTGTTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGCAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTGGGCAGCGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGTGAAATCATCGATCTGGGCGTGCTGCACGGCTTCCTGGAGAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCGGAAATCGGCAACGCGCTGGAGAAG
CAGATCCGTGAAAAACTGCTGACTGCATCGCCAGACGTCAAAGCCAACCCGGTCAAAGAGACCGAAGACGATATGGCCGA
CGCTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.