Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DYY97_RS12710 Genome accession   NZ_LS991421
Coordinates   2601685..2602878 (-) Length   397 a.a.
NCBI ID   WP_047107063.1    Uniprot ID   -
Organism   Lacticaseibacillus zeae isolate CECT 9104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2596685..2607878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY97_RS12680 - 2596783..2597484 (-) 702 WP_070651421.1 histidine phosphatase family protein -
  DYY97_RS12690 - 2597646..2598458 (-) 813 WP_010490880.1 Cof-type HAD-IIB family hydrolase -
  DYY97_RS12695 - 2598553..2599035 (+) 483 WP_070651419.1 ribonuclease H family protein -
  DYY97_RS12700 - 2599041..2599943 (-) 903 WP_010490878.1 LysR family transcriptional regulator -
  DYY97_RS12705 - 2600210..2601415 (+) 1206 WP_070651417.1 PLP-dependent aminotransferase family protein -
  DYY97_RS12710 recA 2601685..2602878 (-) 1194 WP_047107063.1 recombinase RecA Machinery gene
  DYY97_RS12720 - 2603321..2604019 (+) 699 WP_047107059.1 DUF554 domain-containing protein -
  DYY97_RS12725 - 2604098..2604571 (-) 474 WP_010490873.1 hypothetical protein -
  DYY97_RS12730 - 2605290..2607275 (-) 1986 WP_070651415.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 43043.92 Da        Isoelectric Point: 5.4288

>NTDB_id=1143091 DYY97_RS12710 WP_047107063.1 2601685..2602878(-) (recA) [Lacticaseibacillus zeae isolate CECT 9104]
MAKKTTTKNANTKSDTTDRETELEKALQKIKKAFGEGAVMKMGDRPELKVDVVSTGILSLDLALGVGGLPRGRIVEIYGP
ESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVA
ALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKK
GQQVKDGKDVIGFASKLKVTKNKVAPPFKTVETTMSFGHGIEHNTDMINLVTEKDSKFDVITKSGSWYNYGKERLGQGLV
NASHYLDEHPEISKEIEAKIREQAAPKKPEETDDDKKDAKKDVKSTDEAKTEKPAEADDKQEDKKDDPSSFGVDRLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=1143091 DYY97_RS12710 WP_047107063.1 2601685..2602878(-) (recA) [Lacticaseibacillus zeae isolate CECT 9104]
ATGGCGAAAAAAACGACCACAAAGAATGCTAATACAAAATCTGATACCACAGATCGCGAAACCGAATTAGAAAAGGCGCT
GCAGAAAATCAAGAAGGCGTTTGGTGAAGGCGCCGTGATGAAAATGGGTGATCGGCCGGAACTGAAGGTTGATGTTGTTT
CGACTGGCATTCTTTCATTAGATTTGGCACTTGGTGTCGGCGGGTTGCCACGCGGCCGGATTGTGGAAATCTATGGTCCT
GAAAGTACCGGGAAAACCACAATTGCGTTACAGACGATCGCCGAGTTGCAAAAATCCGGCGGCAAGGCAGCTTATATTGA
TGCCGAAAACGCGATGGATCCAAAATATGCGGCTGAATTGGGGGTTAACATTGACGACCTTCTGTTATCCCAGCCAAACT
CGGGTGAACAGGGATTGGAAATTGCCGAAATGCTGATCGAATCCGCCGCCGTTGATATTGTCGTGATTGATTCCGTTGCC
GCTTTGGTTCCCAAGGCTGAAATCGAAGGCGCCATTGGTGACAGTCATGTCGGTTTGCAGGCGCGGCTAATGTCGCAAGC
GCTGCGTAAAATGGCCGGGTCGATTAACAATACCAATACATTGGTCATCTTTATCAATCAGTTGCGGGAAAAAGTCGGCG
TGATGTTTGGTAATCCGGAAGTTACGCCGGGTGGACGCGCCTTGAAGTTTTATGCCTCGGTTCGTATTGAGGTCAAAAAA
GGCCAGCAAGTCAAAGATGGTAAAGACGTAATCGGTTTTGCCAGCAAACTGAAGGTTACCAAGAACAAGGTGGCACCACC
ATTTAAGACGGTTGAAACCACGATGTCATTTGGCCATGGGATTGAGCACAACACCGACATGATCAACTTAGTGACGGAAA
AAGACAGTAAGTTTGATGTCATCACTAAGTCAGGATCCTGGTACAACTATGGCAAAGAGCGTCTGGGCCAAGGCCTTGTG
AACGCCTCCCATTATCTGGACGAACATCCGGAAATTTCCAAGGAAATTGAAGCCAAAATCCGCGAACAGGCTGCACCTAA
GAAGCCGGAAGAAACGGACGACGACAAGAAGGACGCTAAAAAAGACGTCAAGTCAACCGACGAAGCTAAGACTGAAAAGC
CAGCTGAGGCCGATGACAAGCAAGAGGACAAGAAAGACGATCCGTCAAGCTTTGGTGTTGACCGCTTAGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae TIGR4

56.072

97.481

0.547
  recA Streptococcus pneumoniae Rx1

56.072

97.481

0.547
  recA Streptococcus pneumoniae D39

56.072

97.481

0.547
  recA Streptococcus pneumoniae R6

56.072

97.481

0.547
  recA Streptococcus mitis NCTC 12261

57.333

94.458

0.542
  recA Streptococcus pyogenes NZ131

57.995

92.947

0.539
  recA Streptococcus mitis SK321

57.067

94.458

0.539
  recA Streptococcus mutans UA159

56.989

93.703

0.534
  recA Latilactobacillus sakei subsp. sakei 23K

63.272

81.612

0.516
  recA Lactococcus lactis subsp. cremoris KW2

58.892

86.398

0.509
  recA Bacillus subtilis subsp. subtilis str. 168

61.468

82.368

0.506
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.213

85.139

0.479
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.258

88.917

0.474
  recA Glaesserella parasuis strain SC1401

54.651

86.65

0.474
  recA Pseudomonas stutzeri DSM 10701

57.407

81.612

0.469
  recA Acinetobacter baylyi ADP1

55.224

84.383

0.466
  recA Ralstonia pseudosolanacearum GMI1000

58.599

79.093

0.463
  recA Neisseria gonorrhoeae MS11

58.28

79.093

0.461
  recA Neisseria gonorrhoeae strain FA1090

58.28

79.093

0.461
  recA Neisseria gonorrhoeae MS11

58.28

79.093

0.461
  recA Acinetobacter baumannii D1279779

56.075

80.856

0.453
  recA Vibrio cholerae O1 biovar El Tor strain E7946

53.538

81.864

0.438
  recA Vibrio cholerae strain A1552

53.538

81.864

0.438
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.538

81.864

0.438
  recA Helicobacter pylori strain NCTC11637

52.454

82.116

0.431
  recA Helicobacter pylori 26695

52.454

82.116

0.431

Multiple sequence alignment