Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DYY97_RS04225 Genome accession   NZ_LS991421
Coordinates   827378..828421 (+) Length   347 a.a.
NCBI ID   WP_047107448.1    Uniprot ID   -
Organism   Lacticaseibacillus zeae isolate CECT 9104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 822378..833421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY97_RS04205 ymfI 823468..824196 (+) 729 WP_070650244.1 elongation factor P 5-aminopentanone reductase -
  DYY97_RS04210 - 824280..825218 (+) 939 WP_070650243.1 helix-turn-helix domain-containing protein -
  DYY97_RS04215 pgsA 825215..825808 (+) 594 WP_070650242.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DYY97_RS04220 cinA 826082..827323 (+) 1242 WP_070650241.1 competence/damage-inducible protein A Machinery gene
  DYY97_RS04225 recA 827378..828421 (+) 1044 WP_047107448.1 recombinase RecA Machinery gene
  DYY97_RS04230 rny 828903..830474 (+) 1572 WP_010489446.1 ribonuclease Y -
  DYY97_RS04235 - 830613..831266 (-) 654 WP_070650240.1 YigZ family protein -
  DYY97_RS04240 - 831294..832556 (+) 1263 WP_070650239.1 DEAD/DEAH box helicase -
  DYY97_RS04245 - 832714..833232 (+) 519 WP_070650238.1 ComF family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37361.68 Da        Isoelectric Point: 5.3341

>NTDB_id=1143072 DYY97_RS04225 WP_047107448.1 827378..828421(+) (recA) [Lacticaseibacillus zeae isolate CECT 9104]
MADTERQEALATALKKIEKNFGKGAIMKMGDKADTRVSAISSGSLAIDEALGVGGLPRGRIIEMYGPESSGKTTVALHAV
AMVQQHGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVIDSVAALVPQAEIDGDMG
DAHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGIVFGNPEITPGGRALKFYATVRLEIRRSEQIKNGAEIIGN
RTKIKVVKNKVAPPFKVAIVDIMYGRGISQSGELVDMAVEKDIVEKSGSWYAYQGERIGQGREHAKTYLETHEEMRKKIE
GQVREAYGMPLNQVIEVDDPDESARAS

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1143072 DYY97_RS04225 WP_047107448.1 827378..828421(+) (recA) [Lacticaseibacillus zeae isolate CECT 9104]
GTGGCGGACACAGAACGACAAGAAGCGTTAGCAACAGCACTAAAAAAGATTGAAAAGAATTTTGGTAAAGGTGCCATCAT
GAAAATGGGCGACAAGGCTGATACGCGGGTTTCCGCCATTTCCAGTGGCTCACTTGCGATTGACGAAGCGCTTGGCGTTG
GTGGACTACCACGCGGGCGGATTATCGAGATGTACGGTCCTGAAAGTTCCGGGAAAACCACCGTTGCCTTGCATGCGGTG
GCAATGGTGCAGCAGCATGGCGGAACCGCCGCGTATATTGATGCGGAAAATGCCATGGATCCTAAGTATGCGACCGCGCT
GGGCGTCAATATTGATGAACTGTTGCTCTCTCAACCGGATACTGGAGAACAAGGGCTGGAAATTGCTGACGAATTGGTCG
CTTCCGGAGCAATTGATATTCTGGTGATTGATTCGGTGGCGGCATTGGTACCCCAAGCCGAAATAGATGGCGATATGGGC
GATGCGCACGTTGGCTTACAGGCGCGACTGATGTCACAAGCGTTGCGGAAGCTGTCTGGCAACATCAGTAAGACGAAGAC
CATTGCCGTTTTTATTAACCAGATTCGCGAGAAAGTCGGCATCGTTTTTGGCAACCCAGAAATAACGCCAGGTGGTCGGG
CCTTGAAGTTTTATGCAACGGTGCGGTTGGAAATTCGCCGTTCCGAACAGATTAAAAACGGTGCTGAAATTATCGGCAAT
CGTACTAAAATCAAGGTCGTTAAAAATAAAGTGGCGCCGCCTTTTAAAGTGGCGATTGTGGACATTATGTATGGCCGCGG
CATTTCGCAAAGCGGCGAACTAGTCGACATGGCGGTTGAAAAAGACATCGTTGAAAAGTCCGGGTCGTGGTATGCTTATC
AAGGTGAGCGAATTGGCCAAGGACGCGAGCATGCCAAGACTTATCTTGAAACTCATGAGGAAATGCGTAAGAAGATTGAG
GGGCAAGTGCGTGAGGCATATGGAATGCCGTTAAACCAAGTGATTGAAGTGGACGATCCGGATGAATCGGCGCGAGCTTC
ATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.529

97.983

0.769
  recA Bacillus subtilis subsp. subtilis str. 168

70.783

95.677

0.677
  recA Streptococcus mitis NCTC 12261

64.638

99.424

0.643
  recA Streptococcus mutans UA159

65.205

98.559

0.643
  recA Streptococcus pyogenes NZ131

67.073

94.524

0.634
  recA Lactococcus lactis subsp. cremoris KW2

66.869

94.813

0.634
  recA Streptococcus mitis SK321

66.565

94.813

0.631
  recA Streptococcus pneumoniae Rx1

66.565

94.813

0.631
  recA Streptococcus pneumoniae D39

66.565

94.813

0.631
  recA Streptococcus pneumoniae R6

66.565

94.813

0.631
  recA Streptococcus pneumoniae TIGR4

66.565

94.813

0.631
  recA Ralstonia pseudosolanacearum GMI1000

61.468

94.236

0.579
  recA Acinetobacter baumannii D1279779

58.651

98.271

0.576
  recA Acinetobacter baylyi ADP1

60.681

93.084

0.565
  recA Vibrio cholerae strain A1552

58.788

95.101

0.559
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.788

95.101

0.559
  recA Glaesserella parasuis strain SC1401

56.725

98.559

0.559
  recA Neisseria gonorrhoeae MS11

61.006

91.643

0.559
  recA Neisseria gonorrhoeae strain FA1090

61.006

91.643

0.559
  recA Neisseria gonorrhoeae MS11

61.006

91.643

0.559
  recA Pseudomonas stutzeri DSM 10701

59.938

92.795

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.021

94.236

0.556
  recA Helicobacter pylori strain NCTC11637

55.491

99.712

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.133

93.084

0.55
  recA Helicobacter pylori 26695

55.202

99.712

0.55
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.183

94.524

0.522

Multiple sequence alignment