Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MESINF_RS08115 Genome accession   NZ_LS974202
Coordinates   1800094..1801137 (-) Length   347 a.a.
NCBI ID   WP_169699352.1    Uniprot ID   A0A7Z7PR58
Organism   Mesotoga infera isolate MESINF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1795094..1806137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MESINF_RS08095 (MESINF_1729) tilS 1796530..1797909 (-) 1380 WP_169699349.1 tRNA lysidine(34) synthetase TilS -
  MESINF_RS08105 (MESINF_1730) rny 1798076..1799614 (-) 1539 WP_169699350.1 ribonuclease Y -
  MESINF_RS08110 (MESINF_1731) - 1799669..1800097 (-) 429 WP_169699351.1 regulatory protein RecX -
  MESINF_RS08115 (MESINF_1732) recA 1800094..1801137 (-) 1044 WP_169699352.1 recombinase RecA Machinery gene
  MESINF_RS08120 (MESINF_1733) thpR 1801121..1801693 (-) 573 WP_169699353.1 RNA 2',3'-cyclic phosphodiesterase -
  MESINF_RS08125 (MESINF_1734) pgsA 1801695..1802237 (-) 543 WP_169699354.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MESINF_RS08130 (MESINF_1735) rimO 1802224..1803525 (-) 1302 WP_169699355.1 30S ribosomal protein S12 methylthiotransferase RimO -
  MESINF_RS08135 (MESINF_1736) - 1803522..1804058 (-) 537 WP_169699356.1 DUF4416 family protein -
  MESINF_RS08140 (MESINF_1737) - 1804059..1804394 (-) 336 WP_169699357.1 hypothetical protein -
  MESINF_RS08145 (MESINF_1738) - 1804556..1805203 (+) 648 WP_169699358.1 redox-sensing transcriptional repressor Rex -
  MESINF_RS08150 (MESINF_1739) udk 1805203..1805808 (+) 606 WP_169699359.1 uridine kinase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37725.11 Da        Isoelectric Point: 4.9709

>NTDB_id=1143001 MESINF_RS08115 WP_169699352.1 1800094..1801137(-) (recA) [Mesotoga infera isolate MESINF1]
MISKDKKNALERAIKDIEKQFGKGSVMLMGELEDQNIEVISTGSLALDIALTVGGYPRGRVVEVYGAESSGKTTIALHAI
AEVQKRGGIAAFIDAEHALDINYAQNLGVDVDNLLVSQPDYGEQALDIVDGLIRSNAVDLIVVDSVAALVPRTEIEGAMG
ELQVGLQARLMSQALRKISGNVSRSKCIVIFINQTRMKIGVVYGNPETTTGGVALKFYSSVRLEVRKGSAIREGTNVLGN
ETIIKVVKNKVAPPFKEAKVDIIYGQGIEHANELFNLAAEANIIERKGAWYNYITPDGAEVSIGQGKANGVEYLKSNPDV
MFEIENRLRAANNLPLLERQKEEKEEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1143001 MESINF_RS08115 WP_169699352.1 1800094..1801137(-) (recA) [Mesotoga infera isolate MESINF1]
ATGATTTCCAAGGATAAGAAGAATGCACTTGAAAGGGCAATAAAAGACATCGAAAAGCAGTTCGGGAAGGGCTCGGTTAT
GTTGATGGGAGAACTGGAAGACCAGAACATCGAAGTTATATCAACCGGTTCATTGGCTCTGGATATAGCCCTCACTGTCG
GTGGTTATCCCAGGGGGAGAGTCGTCGAAGTTTACGGTGCAGAATCCAGCGGTAAGACAACTATAGCACTACATGCGATT
GCCGAAGTACAGAAGCGCGGTGGTATCGCGGCCTTCATAGATGCCGAGCATGCGCTCGATATCAATTATGCTCAAAATCT
GGGAGTTGATGTCGATAATCTGCTGGTTTCGCAGCCAGATTACGGCGAGCAGGCACTTGATATTGTAGATGGGCTAATCA
GATCCAACGCCGTCGATCTTATAGTGGTTGACTCCGTGGCCGCTCTCGTACCACGCACCGAGATAGAAGGTGCCATGGGA
GAGCTGCAAGTCGGCTTACAGGCTAGACTCATGTCGCAGGCTCTGAGAAAGATCTCAGGTAATGTTAGCAGATCCAAATG
CATAGTTATCTTCATCAATCAGACAAGAATGAAGATCGGTGTCGTTTACGGAAACCCCGAAACCACAACCGGAGGTGTGG
CGCTGAAGTTCTATTCCTCCGTAAGGCTCGAAGTGAGAAAGGGAAGCGCGATCAGAGAAGGTACCAACGTGCTTGGAAAT
GAAACAATTATCAAAGTCGTGAAAAACAAAGTAGCGCCTCCATTCAAAGAGGCCAAGGTCGACATCATCTATGGACAGGG
TATCGAGCATGCCAACGAACTGTTCAACCTGGCCGCAGAGGCAAACATAATAGAGAGAAAAGGTGCCTGGTACAACTACA
TAACCCCCGATGGCGCTGAAGTCAGCATCGGGCAGGGGAAGGCCAACGGAGTGGAGTATCTTAAAAGCAATCCGGATGTG
ATGTTCGAAATCGAGAACAGACTAAGGGCCGCAAACAATCTGCCCCTCCTGGAAAGGCAAAAAGAGGAAAAGGAAGAAGA
ATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z7PR58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

58.382

99.712

0.582
  recA Streptococcus mitis SK321

58.046

100

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

61.027

95.389

0.582
  recA Streptococcus mitis NCTC 12261

57.759

100

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

61.846

93.66

0.579
  recA Pseudomonas stutzeri DSM 10701

61.094

94.813

0.579
  recA Acinetobacter baylyi ADP1

60.976

94.524

0.576
  recA Acinetobacter baumannii D1279779

60.061

94.524

0.568
  recA Streptococcus pneumoniae Rx1

58.507

96.542

0.565
  recA Streptococcus pneumoniae D39

58.507

96.542

0.565
  recA Streptococcus pneumoniae R6

58.507

96.542

0.565
  recA Streptococcus pneumoniae TIGR4

58.507

96.542

0.565
  recA Neisseria gonorrhoeae MS11

58.036

96.83

0.562
  recA Neisseria gonorrhoeae strain FA1090

58.036

96.83

0.562
  recA Neisseria gonorrhoeae MS11

58.036

96.83

0.562
  recA Ralstonia pseudosolanacearum GMI1000

62.3

90.202

0.562
  recA Lactococcus lactis subsp. cremoris KW2

58.084

96.254

0.559
  recA Vibrio cholerae strain A1552

59.146

94.524

0.559
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.146

94.524

0.559
  recA Glaesserella parasuis strain SC1401

59.568

93.372

0.556
  recA Streptococcus pyogenes NZ131

57.751

94.813

0.548
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

55.287

95.389

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.152

95.101

0.525
  recA Helicobacter pylori strain NCTC11637

51.429

100

0.519
  recA Helicobacter pylori 26695

51.143

100

0.516
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.938

93.372

0.513

Multiple sequence alignment