Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQL57_RS04295 Genome accession   NZ_LS483491
Coordinates   946660..947718 (+) Length   352 a.a.
NCBI ID   WP_059106643.1    Uniprot ID   A0AAP8TU51
Organism   Staphylococcus auricularis strain NCTC12101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 941660..952718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL57_RS04270 (NCTC12101_00894) - 942447..943154 (+) 708 WP_059106647.1 SDR family oxidoreductase -
  DQL57_RS04275 - 943329..944154 (+) 826 Protein_851 YmfK family protein -
  DQL57_RS04280 (NCTC12101_00897) - 944179..944571 (+) 393 WP_059106646.1 helix-turn-helix domain-containing protein -
  DQL57_RS04285 (NCTC12101_00898) pgsA 944600..945178 (+) 579 WP_059106645.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DQL57_RS04290 (NCTC12101_00899) - 945344..946495 (+) 1152 WP_059106644.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  DQL57_RS04295 (NCTC12101_00900) recA 946660..947718 (+) 1059 WP_059106643.1 recombinase RecA Machinery gene
  DQL57_RS04300 (NCTC12101_00901) rny 948215..949777 (+) 1563 WP_059106642.1 ribonuclease Y -
  DQL57_RS04305 (NCTC12101_00902) - 949832..950047 (-) 216 WP_059106641.1 hypothetical protein -
  DQL57_RS04310 (NCTC12101_00903) - 950213..951004 (+) 792 WP_059106640.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38264.05 Da        Isoelectric Point: 4.8179

>NTDB_id=1142681 DQL57_RS04295 WP_059106643.1 946660..947718(+) (recA) [Staphylococcus auricularis strain NCTC12101]
MDNERQKALDTVIKNMEKNFGKGAVMKLGDNKGRRVSSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKKDGVAAFIDAEHALDPEYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGD
AHVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEVVGNR
TKLKVVKNKVAPPFRTAEVDIMYGEGISKEGELIDLGVENDIINKSGAWYSYNNERMGQGKENVKTYLKENPEVRSEIEH
KLREALGIFDGDVEEKPDNDNAEEAPASLFDE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1142681 DQL57_RS04295 WP_059106643.1 946660..947718(+) (recA) [Staphylococcus auricularis strain NCTC12101]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTGATTAAAAATATGGAAAAAAACTTTGGTAAAGGTGCAGTGATGAA
ACTTGGCGATAATAAAGGACGCCGAGTATCAAGTACTTCAAGCGGTTCAGTCACATTGGATAATGCGCTAGGTGTCGGAG
GTTATCCGAAAGGCCGTATCATTGAAATATACGGACCAGAAAGCTCAGGTAAAACAACCGTGGCGTTACATGCGATTGCA
GAAGTTCAGAAAAAAGATGGCGTAGCTGCATTTATCGACGCAGAACATGCGTTAGATCCTGAATATGCAGAAGCGCTCGG
TGTAGATATCGACAATCTTTACTTATCTCAACCAGACCATGGTGAACAAGGTTTAGAGATCGCAGAAGCCTTTGTGCGTA
GTGGTGCGGTTGATATTATCGTTGTCGATTCAGTAGCTGCATTAACACCTAAAGCAGAAATCGAAGGTGAAATGGGAGAC
GCACATGTAGGTCTTCAAGCACGTTTAATGTCTCAAGCGCTACGTAAACTATCTGGTGCGATTTCTAAATCAAATACAAC
TGCCATTTTCATCAACCAAATCCGTGAAAAAGTCGGTGTGATGTTCGGTAACCCAGAAACGACACCTGGTGGTCGTGCAT
TGAAATTCTATAGTTCTGTACGATTAGAAGTACGTCGTGCTGAACAATTGAAACAAGGCCAAGAAGTCGTGGGTAACAGA
ACAAAACTCAAAGTCGTGAAAAACAAAGTTGCACCTCCATTTAGAACAGCTGAAGTTGATATTATGTATGGTGAAGGTAT
TTCTAAAGAAGGCGAGCTCATCGATCTTGGTGTCGAAAATGATATTATCAATAAATCTGGTGCTTGGTACTCATATAACA
ATGAACGCATGGGCCAAGGTAAAGAGAACGTGAAAACGTACTTGAAAGAAAATCCAGAAGTTCGTTCAGAAATAGAGCAT
AAATTACGTGAAGCGTTAGGTATCTTTGATGGAGATGTTGAAGAAAAACCTGACAATGACAACGCTGAAGAAGCTCCAGC
TTCACTTTTTGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.074

92.614

0.705
  recA Latilactobacillus sakei subsp. sakei 23K

70.501

96.307

0.679
  recA Streptococcus pneumoniae D39

63.736

100

0.659
  recA Streptococcus pneumoniae Rx1

63.736

100

0.659
  recA Streptococcus pneumoniae R6

63.736

100

0.659
  recA Streptococcus pneumoniae TIGR4

63.736

100

0.659
  recA Streptococcus mutans UA159

64.857

99.432

0.645
  recA Streptococcus mitis SK321

66.967

94.602

0.634
  recA Streptococcus mitis NCTC 12261

66.667

94.602

0.631
  recA Streptococcus pyogenes NZ131

67.173

93.466

0.628
  recA Lactococcus lactis subsp. cremoris KW2

66.465

94.034

0.625
  recA Acinetobacter baylyi ADP1

63.006

98.295

0.619
  recA Acinetobacter baumannii D1279779

63.081

97.727

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.957

93.466

0.616
  recA Neisseria gonorrhoeae MS11

65.35

93.466

0.611
  recA Neisseria gonorrhoeae MS11

65.35

93.466

0.611
  recA Neisseria gonorrhoeae strain FA1090

65.35

93.466

0.611
  recA Helicobacter pylori 26695

64.024

93.182

0.597
  recA Helicobacter pylori strain NCTC11637

63.72

93.182

0.594
  recA Vibrio cholerae strain A1552

63.804

92.614

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.804

92.614

0.591
  recA Ralstonia pseudosolanacearum GMI1000

66.454

88.92

0.591
  recA Pseudomonas stutzeri DSM 10701

59.71

98.011

0.585
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.934

94.034

0.582
  recA Glaesserella parasuis strain SC1401

58.453

99.148

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.877

92.045

0.551

Multiple sequence alignment