Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQL46_RS07870 Genome accession   NZ_LS483482
Coordinates   1636625..1637671 (-) Length   348 a.a.
NCBI ID   WP_080606585.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain NCTC12217     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1631625..1642671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL46_RS07855 (NCTC12217_01602) - 1633278..1634066 (-) 789 WP_070648604.1 TIGR00282 family metallophosphoesterase -
  DQL46_RS07860 (NCTC12217_01603) - 1634222..1634440 (+) 219 WP_002459257.1 hypothetical protein -
  DQL46_RS07865 (NCTC12217_01604) rny 1634797..1636356 (-) 1560 WP_002478266.1 ribonuclease Y -
  DQL46_RS07870 (NCTC12217_01605) recA 1636625..1637671 (-) 1047 WP_080606585.1 recombinase RecA Machinery gene
  DQL46_RS07875 (NCTC12217_01606) - 1637845..1638987 (-) 1143 WP_070648606.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  DQL46_RS07880 (NCTC12217_01607) pgsA 1639158..1639733 (-) 576 WP_002459261.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DQL46_RS07885 (NCTC12217_01608) - 1639755..1640147 (-) 393 WP_002459262.1 helix-turn-helix domain-containing protein -
  DQL46_RS07890 (NCTC12217_01609) - 1640169..1641002 (-) 834 WP_002459263.1 YmfK family protein -
  DQL46_RS07895 (NCTC12217_01610) ymfI 1641100..1641804 (-) 705 WP_002459264.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37748.70 Da        Isoelectric Point: 5.2173

>NTDB_id=1142524 DQL46_RS07870 WP_080606585.1 1636625..1637671(-) (recA) [Staphylococcus lugdunensis strain NCTC12217]
MDNNRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGIAAFIDAEHALDPEYAAALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGQGISKEGELIDLGVEHDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPEVRDDIDR
KLREKLGIFDGDVEEKEAKAPESLFDEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1142524 DQL46_RS07870 WP_080606585.1 1636625..1637671(-) (recA) [Staphylococcus lugdunensis strain NCTC12217]
TTGGATAATAATCGTCAAAAAGCGCTAGATACTGTAATTAAAAATATGGAAAAATCATTCGGTAAAGGTGCCGTAATGAA
ATTAGGGGATAATAAAGGCCGTCGCGTATCTAGTGTATCTACTGGATCAGTGACATTAGATAATGCTTTAGGAGTTGGTG
GATATCCTAAAGGAAGAATTATAGAAATATATGGTCCTGAAAGTTCAGGTAAAACGACCGTTGCATTACATGCAATTGCC
GAAGTTCAAAAAAATGGTGGTATTGCAGCTTTTATTGATGCTGAGCATGCGCTAGATCCTGAATATGCAGCTGCTTTAGG
TGTAGATATTGATAACTTATATCTTTCTCAACCAGATCATGGTGAACAAGGTTTAGAAATCGCTGAAGCCTTTGTACGTA
GTGGAGCTGTTGATATTGTAGTTGTGGACTCAGTTGCAGCTTTAACACCCAAAGCTGAAATTGAAGGAGAAATGGGAGAT
ACGCATGTAGGTTTACAAGCTCGCTTGATGTCTCAAGCATTACGTAAGCTTTCAGGTGCAATTTCTAAATCAAATACGAC
AGCCATTTTCATCAATCAAATTCGTGAAAAGGTTGGCGTAATGTTTGGTAATCCTGAAACAACACCTGGTGGTCGTGCAC
TTAAATTTTATAGTTCAGTACGTTTAGAAGTTCGTCGTGCAGAACAATTAAAGCAAGGTCAAGACATCGTTGGTAATAGA
ACGAAAATCAAAGTTGTTAAAAATAAAGTTGCGCCGCCATTTAAAGTTGCAGAAGTAGATATTATGTATGGTCAAGGAAT
CTCTAAAGAGGGAGAACTCATTGATTTAGGTGTTGAACATGATATTGTTGATAAATCAGGTGCTTGGTACTCATACAATG
GAGATAGAATGGGCCAAGGTAAAGAAAATGTCAAAACTTATCTAAAAGAAAATCCAGAAGTAAGAGATGATATTGATCGT
AAACTAAGAGAAAAATTAGGTATTTTTGATGGTGATGTTGAAGAAAAAGAAGCTAAAGCACCAGAATCTCTATTTGATGA
AGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.074

93.678

0.713
  recA Latilactobacillus sakei subsp. sakei 23K

71.951

94.253

0.678
  recA Streptococcus mutans UA159

65.429

100

0.658
  recA Streptococcus mitis NCTC 12261

66.181

98.563

0.652
  recA Streptococcus pyogenes NZ131

68.997

94.54

0.652
  recA Streptococcus mitis SK321

66.374

98.276

0.652
  recA Streptococcus pneumoniae TIGR4

67.47

95.402

0.644
  recA Streptococcus pneumoniae D39

67.47

95.402

0.644
  recA Streptococcus pneumoniae R6

67.47

95.402

0.644
  recA Streptococcus pneumoniae Rx1

67.47

95.402

0.644
  recA Lactococcus lactis subsp. cremoris KW2

66.97

94.828

0.635
  recA Acinetobacter baumannii D1279779

63.506

100

0.635
  recA Neisseria gonorrhoeae MS11

62.824

99.713

0.626
  recA Neisseria gonorrhoeae MS11

62.824

99.713

0.626
  recA Neisseria gonorrhoeae strain FA1090

62.824

99.713

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.957

94.54

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.258

93.678

0.621
  recA Vibrio cholerae strain A1552

66.258

93.678

0.621
  recA Acinetobacter baylyi ADP1

65.951

93.678

0.618
  recA Helicobacter pylori 26695

64.939

94.253

0.612
  recA Helicobacter pylori strain NCTC11637

64.634

94.253

0.609
  recA Ralstonia pseudosolanacearum GMI1000

65.495

89.943

0.589
  recA Pseudomonas stutzeri DSM 10701

62.27

93.678

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

95.115

0.578
  recA Glaesserella parasuis strain SC1401

60.991

92.816

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.222

90.517

0.563

Multiple sequence alignment