Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HPOKI154_RS00800 Genome accession   NZ_CP006823
Coordinates   157169..158212 (+) Length   347 a.a.
NCBI ID   WP_000963131.1    Uniprot ID   -
Organism   Helicobacter pylori oki154     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 152169..163212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI154_RS00765 (HPOKI154_00805) - 152759..152977 (+) 219 WP_025222420.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  HPOKI154_RS00770 (HPOKI154_00810) ccoP 152979..153857 (+) 879 WP_025313579.1 cytochrome-c oxidase, cbb3-type subunit III -
  HPOKI154_RS00775 (HPOKI154_00815) - 153868..154074 (+) 207 WP_015427380.1 DUF4006 family protein -
  HPOKI154_RS00780 (HPOKI154_00825) - 154175..154759 (+) 585 WP_025313580.1 hypothetical protein -
  HPOKI154_RS00785 (HPOKI154_00830) - 154771..155352 (+) 582 WP_025366682.1 hypothetical protein -
  HPOKI154_RS00790 (HPOKI154_00835) - 155440..156207 (+) 768 WP_025366683.1 hypothetical protein -
  HPOKI154_RS00795 (HPOKI154_00840) - 156204..157070 (-) 867 WP_025366684.1 menaquinone biosynthesis family protein -
  HPOKI154_RS00800 (HPOKI154_00845) recA 157169..158212 (+) 1044 WP_000963131.1 recombinase RecA Machinery gene
  HPOKI154_RS00805 (HPOKI154_00850) eno 158224..159504 (+) 1281 WP_000955622.1 phosphopyruvate hydratase -
  HPOKI154_RS00810 (HPOKI154_00855) - 159497..159772 (+) 276 WP_000146224.1 hypothetical protein -
  HPOKI154_RS00815 (HPOKI154_00860) - 159788..160384 (+) 597 WP_001871708.1 AMIN domain-containing protein -
  HPOKI154_RS00820 (HPOKI154_00865) - 160389..160877 (+) 489 WP_025287804.1 shikimate kinase -
  HPOKI154_RS00825 (HPOKI154_00870) - 160899..161855 (+) 957 WP_025222428.1 PDC sensor domain-containing protein -
  HPOKI154_RS00830 (HPOKI154_00875) - 161852..162970 (-) 1119 WP_025366685.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37655.38 Da        Isoelectric Point: 5.7176

>NTDB_id=114177 HPOKI154_RS00800 WP_000963131.1 157169..158212(+) (recA) [Helicobacter pylori oki154]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=114177 HPOKI154_RS00800 WP_000963131.1 157169..158212(+) (recA) [Helicobacter pylori oki154]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACTCCATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAAGGCAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGCTTGCATATC
ATTGCAGAATGCCAAAAAAATGGTGGCGTGTGCGCGTTTATTGACGCTGAGCATGCCCTAGATGTGCATTACGCTAAGAG
GTTGGGCGTGGATACGGAAAATTTACTCGTTTCTCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCTGTAGCGGCTCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACTACTTTAGTCTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACTGGGG
GTAATGCCTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATTGCGGCTTTAAAACAAAACGAACAGCATATT
GGCAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAGGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCTTACTGAAAGAAGACAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCAGATGAGCCTTTAGAAGAAATGGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.135

100

0.991
  recA Helicobacter pylori 26695

99.135

100

0.991
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.659

94.524

0.744
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae strain FA1090

66.769

93.66

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.855

95.677

0.611
  recA Bacillus subtilis subsp. subtilis str. 168

64.923

93.66

0.608
  recA Acinetobacter baumannii D1279779

63.609

94.236

0.599
  recA Acinetobacter baylyi ADP1

63.303

94.236

0.597
  recA Ralstonia pseudosolanacearum GMI1000

61.607

96.83

0.597
  recA Pseudomonas stutzeri DSM 10701

60.234

98.559

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.012

96.83

0.591
  recA Vibrio cholerae strain A1552

61.012

96.83

0.591
  recA Glaesserella parasuis strain SC1401

60.976

94.524

0.576
  recA Streptococcus pneumoniae Rx1

55.556

100

0.562
  recA Streptococcus pneumoniae D39

55.556

100

0.562
  recA Streptococcus pneumoniae R6

55.556

100

0.562
  recA Streptococcus pneumoniae TIGR4

55.556

100

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

54.622

100

0.562
  recA Streptococcus pyogenes NZ131

57.273

95.101

0.545
  recA Lactococcus lactis subsp. cremoris KW2

57.447

94.813

0.545
  recA Streptococcus mitis SK321

57.143

94.813

0.542
  recA Streptococcus mitis NCTC 12261

57.143

94.813

0.542
  recA Streptococcus mutans UA159

55.689

96.254

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.135

93.948

0.527

Multiple sequence alignment