Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HPOKI112_RS01005 Genome accession   NZ_CP006821
Coordinates   208856..209899 (+) Length   347 a.a.
NCBI ID   WP_000952097.1    Uniprot ID   G2MDS0
Organism   Helicobacter pylori oki112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 203856..214899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI112_RS00970 (HPOKI112_01020) - 204444..204662 (+) 219 WP_001876875.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  HPOKI112_RS00975 (HPOKI112_01025) ccoP 204664..205542 (+) 879 WP_000346803.1 cytochrome-c oxidase, cbb3-type subunit III -
  HPOKI112_RS00980 (HPOKI112_01030) - 205553..205759 (+) 207 WP_000670506.1 DUF4006 family protein -
  HPOKI112_RS00985 (HPOKI112_01040) - 205860..206447 (+) 588 WP_025275556.1 hypothetical protein -
  HPOKI112_RS00990 (HPOKI112_01045) - 206460..207041 (+) 582 WP_025275557.1 hypothetical protein -
  HPOKI112_RS00995 (HPOKI112_01050) - 207130..207897 (+) 768 WP_025276625.1 hypothetical protein -
  HPOKI112_RS01000 (HPOKI112_01055) - 207894..208757 (-) 864 WP_025275559.1 menaquinone biosynthesis family protein -
  HPOKI112_RS01005 (HPOKI112_01060) recA 208856..209899 (+) 1044 WP_000952097.1 recombinase RecA Machinery gene
  HPOKI112_RS01010 (HPOKI112_01065) eno 209911..211191 (+) 1281 WP_000955622.1 phosphopyruvate hydratase -
  HPOKI112_RS01015 (HPOKI112_01070) - 211184..211459 (+) 276 WP_000146233.1 hypothetical protein -
  HPOKI112_RS01020 (HPOKI112_01075) - 211477..212073 (+) 597 WP_025309589.1 AMIN domain-containing protein -
  HPOKI112_RS01025 (HPOKI112_01080) - 212078..212566 (+) 489 WP_025275564.1 shikimate kinase -
  HPOKI112_RS01030 (HPOKI112_01085) - 212588..213544 (+) 957 WP_000952277.1 PDC sensor domain-containing protein -
  HPOKI112_RS01035 (HPOKI112_01090) - 213541..214645 (-) 1105 Protein_195 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37654.39 Da        Isoelectric Point: 5.5047

>NTDB_id=114147 HPOKI112_RS01005 WP_000952097.1 208856..209899(+) (recA) [Helicobacter pylori oki112]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=114147 HPOKI112_RS01005 WP_000952097.1 208856..209899(+) (recA) [Helicobacter pylori oki112]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGTTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGATGTGCATTACGCTAAGAG
ATTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCCGTAGCGGCTCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACTACTTTAATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAATGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAACATATC
GGTAACAGAGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCTTACTCAAAGAAGACAAAGCCCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCGGATGAGCCTTTAGAAGAAATGGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

100

100

1
  recA Helicobacter pylori 26695

99.424

100

0.994
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.963

94.524

0.746
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae strain FA1090

66.769

93.66

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.458

95.677

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

64.22

94.236

0.605
  recA Acinetobacter baylyi ADP1

63.914

94.236

0.602
  recA Ralstonia pseudosolanacearum GMI1000

61.905

96.83

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

96.83

0.594
  recA Vibrio cholerae strain A1552

61.31

96.83

0.594
  recA Pseudomonas stutzeri DSM 10701

60.234

98.559

0.594
  recA Glaesserella parasuis strain SC1401

60.671

94.524

0.573
  recA Streptococcus pneumoniae Rx1

56.125

100

0.568
  recA Streptococcus pneumoniae D39

56.125

100

0.568
  recA Streptococcus pneumoniae R6

56.125

100

0.568
  recA Streptococcus pneumoniae TIGR4

56.125

100

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

54.902

100

0.565
  recA Lactococcus lactis subsp. cremoris KW2

58.055

94.813

0.55
  recA Streptococcus pyogenes NZ131

57.879

95.101

0.55
  recA Streptococcus mitis NCTC 12261

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mutans UA159

56.287

96.254

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53

Multiple sequence alignment