Detailed information NTG0114127

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: HPOKI102_RS00990
• Genome accession: NZ_CP006820
• Coordinates: 207366..208409 (+)
• Length: 347 a.a.
• NCBI ID: WP_025275560.1
• Uniprot ID: A0A438ZKN4
• Organism: Helicobacter pylori oki102
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 202366..213409

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI102_RS00955 (HPOKI102_01025)	-	202954..203172 (+)	219	WP_001876875.1	cytochrome c oxidase, cbb3-type, CcoQ subunit	-
HPOKI102_RS00960 (HPOKI102_01030)	ccoP	203174..204052 (+)	879	WP_000346803.1	cytochrome-c oxidase, cbb3-type subunit III	-
HPOKI102_RS00965 (HPOKI102_01035)	-	204063..204269 (+)	207	WP_000670506.1	DUF4006 family protein	-
HPOKI102_RS00970 (HPOKI102_01045)	-	204370..204957 (+)	588	WP_025275556.1	hypothetical protein	-
HPOKI102_RS00975 (HPOKI102_01050)	-	204970..205551 (+)	582	WP_025275557.1	hypothetical protein	-
HPOKI102_RS00980 (HPOKI102_01055)	-	205640..206407 (+)	768	WP_025275558.1	hypothetical protein	-
HPOKI102_RS00985 (HPOKI102_01060)	-	206404..207267 (-)	864	WP_025275559.1	menaquinone biosynthesis family protein	-
HPOKI102_RS00990 (HPOKI102_01065)	recA	207366..208409 (+)	1044	WP_025275560.1	recombinase RecA	Machinery gene
HPOKI102_RS00995 (HPOKI102_01070)	eno	208421..209701 (+)	1281	WP_025275561.1	phosphopyruvate hydratase	-
HPOKI102_RS01000 (HPOKI102_01075)	-	209694..209969 (+)	276	WP_025275562.1	hypothetical protein	-
HPOKI102_RS01005 (HPOKI102_01080)	-	209987..210583 (+)	597	WP_025275563.1	AMIN domain-containing protein	-
HPOKI102_RS01010 (HPOKI102_01085)	-	210588..211076 (+)	489	WP_025275564.1	shikimate kinase	-
HPOKI102_RS01015 (HPOKI102_01090)	-	211098..212054 (+)	957	WP_000952277.1	PDC sensor domain-containing protein	-
HPOKI102_RS01020 (HPOKI102_01095)	-	212051..213154 (-)	1104	WP_025275565.1	glycosyltransferase family 8 protein	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 37656.36 Da
• Isoelectric Point: 5.5047

>NTDB_id=114127 HPOKI102_RS00990 WP_025275560.1 207366..208409(+) (recA) [Helicobacter pylori oki102]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide

• Length: 1044 bp

>NTDB_id=114127 HPOKI102_RS00990 WP_025275560.1 207366..208409(+) (recA) [Helicobacter pylori oki102]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGTTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGATGTGCATTACGCTAAGAG
ATTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTGGTGGTGGTGGATTCGGTGGCGGCTCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTCTTGCACAAAATGAA
CACTACTCTCGTTTTTATTAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACAGGGG
GTAATGCGTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCCTCTCTCAAACAAAACGAACAACATATC
GGTAACAGAGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCTTACTCAAAGAAGACAAAGCCCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCGGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-271)

3D structure

• AlphaFold DB: A0A438ZKN4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Helicobacter pylori 26695	99.424	100	0.994
recA	Helicobacter pylori strain NCTC11637	99.424	100	0.994
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	78.659	94.524	0.744
recA	Neisseria gonorrhoeae MS11	67.385	93.66	0.631
recA	Neisseria gonorrhoeae MS11	67.385	93.66	0.631
recA	Neisseria gonorrhoeae strain FA1090	67.385	93.66	0.631
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	64.157	95.677	0.614
recA	Bacillus subtilis subsp. subtilis str. 168	64.923	93.66	0.608
recA	Acinetobacter baumannii D1279779	63.914	94.236	0.602
recA	Acinetobacter baylyi ADP1	63.609	94.236	0.599
recA	Ralstonia pseudosolanacearum GMI1000	61.905	96.83	0.599
recA	Pseudomonas stutzeri DSM 10701	59.649	98.559	0.588
recA	Vibrio cholerae O1 biovar El Tor strain E7946	60.714	96.83	0.588
recA	Vibrio cholerae strain A1552	60.714	96.83	0.588
recA	Glaesserella parasuis strain SC1401	60.976	94.524	0.576
recA	Latilactobacillus sakei subsp. sakei 23K	54.902	100	0.565
recA	Streptococcus pneumoniae Rx1	55.84	100	0.565
recA	Streptococcus pneumoniae D39	55.84	100	0.565
recA	Streptococcus pneumoniae R6	55.84	100	0.565
recA	Streptococcus pneumoniae TIGR4	55.84	100	0.565
recA	Streptococcus pyogenes NZ131	57.576	95.101	0.548
recA	Lactococcus lactis subsp. cremoris KW2	57.751	94.813	0.548
recA	Streptococcus mitis NCTC 12261	57.447	94.813	0.545
recA	Streptococcus mitis SK321	57.143	94.813	0.542
recA	Streptococcus mutans UA159	55.988	96.254	0.539
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	56.135	93.948	0.527