Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | DQN49_RS02105 | Genome accession | NZ_LS483429 |
| Coordinates | 390499..391563 (+) | Length | 354 a.a. |
| NCBI ID | WP_005654959.1 | Uniprot ID | Q4QMV2 |
| Organism | Haemophilus aegyptius strain NCTC8502 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 348395..392484 | 390499..391563 | within | 0 |
Gene organization within MGE regions
Location: 348395..392484
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN49_RS01805 (NCTC8502_00366) | - | 348395..349405 (-) | 1011 | WP_006995367.1 | phage portal protein | - |
| DQN49_RS01810 (NCTC8502_00368) | - | 349415..351193 (-) | 1779 | Protein_358 | terminase large subunit domain-containing protein | - |
| DQN49_RS01820 (NCTC8502_00371) | - | 351618..352262 (+) | 645 | WP_006995363.1 | phage repressor protein | - |
| DQN49_RS01825 (NCTC8502_00372) | - | 352440..353255 (+) | 816 | WP_006995362.1 | GPO family capsid scaffolding protein | - |
| DQN49_RS01830 (NCTC8502_00373) | - | 353277..354326 (+) | 1050 | WP_006995361.1 | phage major capsid protein, P2 family | - |
| DQN49_RS01835 (NCTC8502_00374) | gpM | 354338..354988 (+) | 651 | WP_006995360.1 | phage terminase small subunit | - |
| DQN49_RS01840 (NCTC8502_00375) | - | 355281..355787 (+) | 507 | WP_006995358.1 | head completion/stabilization protein | - |
| DQN49_RS01845 (NCTC8502_00376) | - | 355787..355996 (+) | 210 | WP_005668467.1 | tail protein X | - |
| DQN49_RS01850 (NCTC8502_00377) | - | 355998..356219 (+) | 222 | WP_006995357.1 | phage holin | - |
| DQN49_RS01855 (NCTC8502_00378) | - | 356212..356730 (+) | 519 | WP_005653059.1 | lysozyme | - |
| DQN49_RS01860 (NCTC8502_00379) | - | 356715..357065 (+) | 351 | WP_006995356.1 | hypothetical protein | - |
| DQN49_RS10345 | lysC | 356980..357243 (+) | 264 | WP_005672206.1 | Rz1-like lysis system protein LysC | - |
| DQN49_RS01870 (NCTC8502_00380) | - | 357240..357455 (+) | 216 | WP_006995354.1 | TraR/DksA family transcriptional regulator | - |
| DQN49_RS01875 (NCTC8502_00381) | - | 357452..357922 (+) | 471 | WP_006995353.1 | phage tail protein | - |
| DQN49_RS01880 (NCTC8502_00382) | - | 357922..358380 (+) | 459 | WP_006995352.1 | phage virion morphogenesis protein | - |
| DQN49_RS01885 (NCTC8502_00383) | - | 358358..358630 (-) | 273 | WP_006995351.1 | hypothetical protein | - |
| DQN49_RS01890 (NCTC8502_00384) | - | 358700..361435 (+) | 2736 | WP_006995350.1 | phage tail tape measure protein | - |
| DQN49_RS10170 (NCTC8502_00385) | - | 361512..361679 (+) | 168 | WP_006995349.1 | hypothetical protein | - |
| DQN49_RS01895 (NCTC8502_00386) | - | 361657..362109 (+) | 453 | WP_006995348.1 | hypothetical protein | - |
| DQN49_RS01900 (NCTC8502_00387) | - | 362210..362809 (+) | 600 | WP_005668437.1 | phage baseplate assembly protein V | - |
| DQN49_RS01905 (NCTC8502_00388) | - | 362811..363149 (+) | 339 | WP_005633786.1 | GPW/gp25 family protein | - |
| DQN49_RS01910 (NCTC8502_00389) | - | 363146..364060 (+) | 915 | WP_006995347.1 | baseplate J/gp47 family protein | - |
| DQN49_RS01915 (NCTC8502_00390) | - | 364050..364586 (+) | 537 | WP_006995346.1 | phage tail protein I | - |
| DQN49_RS01920 (NCTC8502_00391) | - | 364595..366841 (+) | 2247 | WP_006995345.1 | phage tail protein | - |
| DQN49_RS01925 (NCTC8502_00392) | - | 366853..367455 (+) | 603 | WP_005661624.1 | hypothetical protein | - |
| DQN49_RS01930 (NCTC8502_00393) | - | 367452..367952 (+) | 501 | WP_065246943.1 | enoyl-CoA hydratase | - |
| DQN49_RS01935 (NCTC8502_00394) | - | 368128..368247 (+) | 120 | WP_005641687.1 | Com family DNA-binding transcriptional regulator | - |
| DQN49_RS01940 (NCTC8502_00395) | - | 368304..369149 (+) | 846 | WP_006995342.1 | hypothetical protein | - |
| DQN49_RS01950 (NCTC8502_00396) | - | 369594..370778 (+) | 1185 | WP_006995341.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| DQN49_RS01955 (NCTC8502_00397) | - | 370782..371288 (+) | 507 | WP_006995340.1 | phage major tail tube protein | - |
| DQN49_RS01960 (NCTC8502_00398) | - | 371357..371656 (+) | 300 | WP_005655095.1 | phage tail assembly protein | - |
| DQN49_RS01965 (NCTC8502_00399) | - | 371656..371802 (+) | 147 | WP_006995339.1 | GpE family phage tail protein | - |
| DQN49_RS10175 (NCTC8502_00400) | - | 371970..372131 (+) | 162 | WP_006995337.1 | hypothetical protein | - |
| DQN49_RS01970 (NCTC8502_00401) | - | 372131..372568 (+) | 438 | WP_006995336.1 | phage tail protein | - |
| DQN49_RS01975 (NCTC8502_00402) | - | 372568..373767 (+) | 1200 | WP_006995335.1 | phage late control D family protein | - |
| DQN49_RS01980 (NCTC8502_00403) | - | 373793..374032 (-) | 240 | WP_032826252.1 | excalibur calcium-binding domain-containing protein | - |
| DQN49_RS01985 (NCTC8502_00404) | - | 374043..375212 (-) | 1170 | WP_006995333.1 | hypothetical protein | - |
| DQN49_RS01990 (NCTC8502_00405) | - | 375222..375911 (-) | 690 | WP_006995332.1 | S24 family peptidase | - |
| DQN49_RS01995 (NCTC8502_00406) | - | 376030..376278 (+) | 249 | WP_013527354.1 | helix-turn-helix domain-containing protein | - |
| DQN49_RS02000 | - | 376643..376984 (+) | 342 | WP_032826251.1 | hypothetical protein | - |
| DQN49_RS02005 (NCTC8502_00409) | - | 377047..377289 (+) | 243 | WP_005655063.1 | hypothetical protein | - |
| DQN49_RS02010 (NCTC8502_00410) | - | 377380..377640 (+) | 261 | WP_006995329.1 | hypothetical protein | - |
| DQN49_RS02015 (NCTC8502_00411) | - | 377658..378038 (+) | 381 | WP_006995328.1 | hypothetical protein | - |
| DQN49_RS02020 (NCTC8502_00412) | - | 378042..378284 (+) | 243 | WP_005668404.1 | hypothetical protein | - |
| DQN49_RS02025 (NCTC8502_00414) | - | 378410..378718 (+) | 309 | WP_005655052.1 | hypothetical protein | - |
| DQN49_RS02030 (NCTC8502_00415) | - | 378728..380914 (+) | 2187 | WP_006995326.1 | replication endonuclease | - |
| DQN49_RS02035 (NCTC8502_00416) | - | 380933..381124 (+) | 192 | WP_005668397.1 | hypothetical protein | - |
| DQN49_RS02040 (NCTC8502_00417) | - | 381135..381344 (+) | 210 | WP_005668395.1 | hypothetical protein | - |
| DQN49_RS02045 (NCTC8502_00418) | - | 381358..381879 (+) | 522 | WP_005668393.1 | MazG-like family protein | - |
| DQN49_RS02055 (NCTC8502_00419) | - | 382118..383173 (+) | 1056 | WP_032826250.1 | site-specific integrase | - |
| DQN49_RS02100 | sxy/tfoX | 389473..390126 (-) | 654 | WP_006995324.1 | DNA transformation protein TfoX | Regulator |
| DQN49_RS02105 (NCTC8502_00429) | recA | 390499..391563 (+) | 1065 | WP_005654959.1 | recombinase RecA | Machinery gene |
| DQN49_RS02110 (NCTC8502_00430) | recX | 391643..392101 (+) | 459 | WP_006995323.1 | recombination regulator RecX | - |
| DQN49_RS02115 (NCTC8502_00431) | crcB | 392098..392484 (-) | 387 | WP_005692779.1 | fluoride efflux transporter CrcB | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 38132.56 Da Isoelectric Point: 4.8875
>NTDB_id=1141213 DQN49_RS02105 WP_005654959.1 390499..391563(+) (recA) [Haemophilus aegyptius strain NCTC8502]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTKTLDVESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDM
GDSHMGLQARLMSQALRKLTGQIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYSYNGEKIGQGKANSMKWLNENIEKSDEL
EARLRAELVANPEQALMADIEQSENNTESESDFE
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTKTLDVESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDM
GDSHMGLQARLMSQALRKLTGQIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYSYNGEKIGQGKANSMKWLNENIEKSDEL
EARLRAELVANPEQALMADIEQSENNTESESDFE
Nucleotide
Download Length: 1065 bp
>NTDB_id=1141213 DQN49_RS02105 WP_005654959.1 390499..391563(+) (recA) [Haemophilus aegyptius strain NCTC8502]
ATGGCAACTCAAGAAGAAAAACAAAAAGCCCTAGCGGCTGCACTAGGGCAAATCGAAAAACAATTTGGTAAAGGTTCAAT
TATGAAATTAGGCGATACCAAAACGTTGGATGTAGAGTCTATTTCTACTGGATCACTTGGGTTAGATGTTGCGCTAGGGA
TTGGTGGTTTGCCTATGGGTCGAATTGTAGAAATTTTCGGGCCTGAATCATCGGGTAAAACAACATTAACTCTTTCCGTC
ATTGCTCAAGCGCAAAAAGCAGGAAAAACCTGTGCATTTATTGATGCAGAACACGCACTTGATCCTATTTATGCAGCAAA
ACTTGGTGTAGATGTAAAAGAACTTTTTGTTTCTCAACCAGATAATGGGGAACAGGCACTTGAAATCTGTGATGCATTAG
TTCGCTCAGGTGCAATTGATGTAATTATTGTGGACTCCGTTGCCGCACTGACACCAAAAGCTGAAATTGAAGGCGATATG
GGCGATTCTCATATGGGTCTGCAAGCACGTTTAATGTCTCAAGCCTTGCGTAAACTCACAGGTCAAATTAAAAATGCAAA
CTGTCTAGTTGTGTTTATTAACCAAATCCGTATGAAAATAGGCGTGATGTTTGGTAATCCTGAAACTACTACGGGCGGTA
ATGCATTAAAATTCTATTCTTCTGTTCGCTTAGATATTCGCCGTACAGGTTCTGTAAAAGATGGCGAAAATATTATTGGA
AATGAAACCCGCGTAAAAGTAGTGAAAAACAAATTAGCGGCACCATTCCGCCAAGTGGATTTCCAAATTCTCTATGGAGA
AGGCATTTCAAAAGCAGGAGAATTATTAGAACTTGGTGTAAAACACAAACTTGTAGAAAAATCAGGCGCGTGGTATTCCT
ACAATGGTGAAAAAATTGGTCAAGGAAAGGCTAATTCAATGAAATGGCTTAACGAAAATATAGAGAAATCAGATGAATTA
GAAGCTCGTTTACGCGCAGAATTAGTGGCTAATCCAGAACAAGCCTTAATGGCGGATATTGAACAATCTGAAAATAATAC
TGAATCAGAAAGTGATTTTGAATAA
ATGGCAACTCAAGAAGAAAAACAAAAAGCCCTAGCGGCTGCACTAGGGCAAATCGAAAAACAATTTGGTAAAGGTTCAAT
TATGAAATTAGGCGATACCAAAACGTTGGATGTAGAGTCTATTTCTACTGGATCACTTGGGTTAGATGTTGCGCTAGGGA
TTGGTGGTTTGCCTATGGGTCGAATTGTAGAAATTTTCGGGCCTGAATCATCGGGTAAAACAACATTAACTCTTTCCGTC
ATTGCTCAAGCGCAAAAAGCAGGAAAAACCTGTGCATTTATTGATGCAGAACACGCACTTGATCCTATTTATGCAGCAAA
ACTTGGTGTAGATGTAAAAGAACTTTTTGTTTCTCAACCAGATAATGGGGAACAGGCACTTGAAATCTGTGATGCATTAG
TTCGCTCAGGTGCAATTGATGTAATTATTGTGGACTCCGTTGCCGCACTGACACCAAAAGCTGAAATTGAAGGCGATATG
GGCGATTCTCATATGGGTCTGCAAGCACGTTTAATGTCTCAAGCCTTGCGTAAACTCACAGGTCAAATTAAAAATGCAAA
CTGTCTAGTTGTGTTTATTAACCAAATCCGTATGAAAATAGGCGTGATGTTTGGTAATCCTGAAACTACTACGGGCGGTA
ATGCATTAAAATTCTATTCTTCTGTTCGCTTAGATATTCGCCGTACAGGTTCTGTAAAAGATGGCGAAAATATTATTGGA
AATGAAACCCGCGTAAAAGTAGTGAAAAACAAATTAGCGGCACCATTCCGCCAAGTGGATTTCCAAATTCTCTATGGAGA
AGGCATTTCAAAAGCAGGAGAATTATTAGAACTTGGTGTAAAACACAAACTTGTAGAAAAATCAGGCGCGTGGTATTCCT
ACAATGGTGAAAAAATTGGTCAAGGAAAGGCTAATTCAATGAAATGGCTTAACGAAAATATAGAGAAATCAGATGAATTA
GAAGCTCGTTTACGCGCAGAATTAGTGGCTAATCCAGAACAAGCCTTAATGGCGGATATTGAACAATCTGAAAATAATAC
TGAATCAGAAAGTGATTTTGAATAA
Similar proteins
Only experimentally validated proteins are listed.