Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQN52_RS04445 Genome accession   NZ_LS483426
Coordinates   825199..826308 (-) Length   369 a.a.
NCBI ID   WP_003785355.1    Uniprot ID   -
Organism   Kingella kingae strain NCTC10529     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 820199..831308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN52_RS04430 (NCTC10529_00868) - 821188..821490 (-) 303 WP_003789339.1 lipopolysaccharide assembly LapA domain-containing protein -
  DQN52_RS04435 (NCTC10529_00869) - 821660..822604 (+) 945 WP_003785353.1 branched-chain amino acid transaminase -
  DQN52_RS04440 (NCTC10529_00870) dnaK 822904..824829 (-) 1926 WP_003785354.1 molecular chaperone DnaK -
  DQN52_RS04445 (NCTC10529_00871) recA 825199..826308 (-) 1110 WP_003785355.1 recombinase RecA Machinery gene
  DQN52_RS04450 (NCTC10529_00872) - 826459..826665 (-) 207 WP_003785358.1 bacterioferritin-associated ferredoxin -
  DQN52_RS04455 (NCTC10529_00873) - 826837..829047 (+) 2211 WP_003785360.1 UvrD-helicase domain-containing protein -
  DQN52_RS04460 (NCTC10529_00874) carA 829282..830409 (+) 1128 WP_032827584.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  DQN52_RS04465 (NCTC10529_00875) - 830414..830716 (+) 303 WP_003785363.1 hypothetical protein -
  DQN52_RS04470 (NCTC10529_00876) - 830717..831046 (+) 330 WP_331250424.1 YetF domain-containing protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39630.83 Da        Isoelectric Point: 4.7316

>NTDB_id=1141183 DQN52_RS04445 WP_003785355.1 825199..826308(-) (recA) [Kingella kingae strain NCTC10529]
MAEKKSSKDKVSVNRPTTEAERATALQAALAQIEKNYGKGAVMKMDGSHQDEELQVISTGSLTLDIALGVGGLPRGRIVE
IYGAESSGKTTLCLESIAQCQKAGGTCAFIDAEHAFDPIYARKLGVEVEKLLVSQPDTGEQALEICDMLVRSGGVDMVVI
DSVAALVPKAEIEGDMGDSHVGLHARLMSQALRKLAGHIKKTNTLAVFINQTRMKIGVSYGNPETTTGGNALKFYASVRL
NISGTTKIEKNGEAIGKETKVKVVKNKVAPPFRMAEFDILYGEGISWEGELIDLGADLDVINKSGSWFSYEGNKIGQGKD
NVRQWLKDNPEIANEIAAKIRELVSDNPSAIESISADDDDNAPDFGDDE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1141183 DQN52_RS04445 WP_003785355.1 825199..826308(-) (recA) [Kingella kingae strain NCTC10529]
ATGGCAGAAAAAAAATCCAGCAAAGACAAAGTATCCGTAAACCGCCCCACCACCGAAGCCGAACGCGCCACCGCATTGCA
GGCTGCTTTGGCACAAATTGAGAAAAACTACGGCAAAGGCGCAGTCATGAAAATGGACGGCAGCCACCAAGACGAAGAAT
TGCAAGTCATTTCCACAGGTTCGCTCACATTGGACATTGCCTTGGGTGTGGGCGGTTTACCACGTGGTCGTATTGTGGAA
ATTTACGGCGCAGAATCATCGGGCAAAACCACTTTATGTTTGGAATCGATTGCACAATGCCAAAAAGCAGGCGGAACGTG
TGCGTTTATTGACGCAGAACACGCATTTGACCCTATTTACGCGCGTAAATTGGGCGTAGAAGTCGAAAAATTGTTGGTAT
CGCAACCCGACACAGGCGAACAAGCTTTGGAAATTTGCGATATGTTGGTGCGCTCGGGCGGTGTGGATATGGTCGTGATT
GATTCGGTTGCCGCACTTGTTCCCAAAGCGGAAATTGAAGGCGACATGGGCGACAGCCACGTTGGTTTGCACGCTCGTTT
GATGAGCCAAGCCTTGCGTAAACTGGCAGGACACATCAAAAAAACCAACACGCTGGCGGTGTTCATCAACCAAACGCGCA
TGAAAATTGGCGTGAGCTATGGCAATCCAGAAACCACAACAGGCGGCAACGCGTTGAAATTCTATGCGTCTGTGCGATTG
AATATTTCTGGCACAACCAAAATCGAGAAAAATGGCGAAGCGATTGGTAAAGAAACCAAAGTCAAAGTGGTTAAAAACAA
AGTTGCGCCACCGTTCCGCATGGCTGAATTCGACATTTTGTATGGCGAAGGCATTAGCTGGGAGGGCGAATTGATTGATT
TGGGCGCAGATTTGGACGTGATTAACAAATCGGGTTCGTGGTTTAGCTACGAGGGCAACAAAATCGGTCAAGGCAAAGAC
AACGTGCGCCAATGGTTGAAAGATAACCCTGAAATCGCCAACGAAATTGCGGCAAAAATCCGCGAATTGGTGAGCGACAA
TCCATCGGCTATCGAAAGCATTTCGGCTGACGATGATGACAATGCGCCTGATTTTGGCGATGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

76.276

90.244

0.688
  recA Neisseria gonorrhoeae strain FA1090

76.276

90.244

0.688
  recA Neisseria gonorrhoeae MS11

76.276

90.244

0.688
  recA Glaesserella parasuis strain SC1401

62.097

100

0.626
  recA Acinetobacter baylyi ADP1

63.953

93.225

0.596
  recA Ralstonia pseudosolanacearum GMI1000

69.304

85.637

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.667

88.618

0.591
  recA Pseudomonas stutzeri DSM 10701

68.454

85.908

0.588
  recA Acinetobacter baumannii D1279779

62.428

93.767

0.585
  recA Vibrio cholerae strain A1552

62.573

92.683

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.573

92.683

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.834

91.599

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

63.777

87.534

0.558
  recA Streptococcus mitis NCTC 12261

59.42

93.496

0.556
  recA Streptococcus mitis SK321

59.13

93.496

0.553
  recA Streptococcus pyogenes NZ131

62.462

88.076

0.55
  recA Helicobacter pylori strain NCTC11637

61.89

88.889

0.55
  recA Helicobacter pylori 26695

61.89

88.889

0.55
  recA Streptococcus mutans UA159

62.154

88.076

0.547
  recA Latilactobacillus sakei subsp. sakei 23K

57.714

94.851

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.929

91.057

0.537
  recA Streptococcus pneumoniae TIGR4

60.736

88.347

0.537
  recA Streptococcus pneumoniae R6

60.736

88.347

0.537
  recA Streptococcus pneumoniae D39

60.736

88.347

0.537
  recA Streptococcus pneumoniae Rx1

60.736

88.347

0.537
  recA Lactococcus lactis subsp. cremoris KW2

60.123

88.347

0.531

Multiple sequence alignment