Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQM62_RS00400 Genome accession   NZ_LS483418
Coordinates   67685..68836 (+) Length   383 a.a.
NCBI ID   WP_011922545.1    Uniprot ID   A0A075SNG0
Organism   Streptococcus suis strain NCTC10234     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 62685..73836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM62_RS00380 (NCTC10234_00077) ruvA 64531..65121 (+) 591 WP_011921679.1 Holliday junction branch migration protein RuvA -
  DQM62_RS00390 (NCTC10234_00078) - 65846..66415 (+) 570 WP_012774893.1 DNA-3-methyladenine glycosylase I -
  DQM62_RS00395 (NCTC10234_00079) cinA 66452..67633 (+) 1182 WP_012774894.1 competence/damage-inducible protein A Machinery gene
  DQM62_RS00400 (NCTC10234_00080) recA 67685..68836 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  DQM62_RS00405 (NCTC10234_00081) spx 69072..69470 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  DQM62_RS00410 (NCTC10234_00082) - 69570..69836 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  DQM62_RS00415 (NCTC10234_00083) ruvX 69836..70255 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  DQM62_RS00420 (NCTC10234_00084) - 70267..70587 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  DQM62_RS00425 (NCTC10234_00085) - 70795..71373 (+) 579 WP_012774895.1 nucleotidyltransferase family protein -
  DQM62_RS00435 (NCTC10234_00087) rpsJ 72035..72343 (+) 309 WP_011922546.1 30S ribosomal protein S10 -
  DQM62_RS00440 (NCTC10234_00088) rplC 72440..73066 (+) 627 WP_011921686.1 50S ribosomal protein L3 -
  DQM62_RS00445 (NCTC10234_00089) rplD 73091..73714 (+) 624 WP_004195490.1 50S ribosomal protein L4 -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40860.59 Da        Isoelectric Point: 4.8910

>NTDB_id=1140929 DQM62_RS00400 WP_011922545.1 67685..68836(+) (recA) [Streptococcus suis strain NCTC10234]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEEAPVVAEEIQDVILDLDGGIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=1140929 DQM62_RS00400 WP_011922545.1 67685..68836(+) (recA) [Streptococcus suis strain NCTC10234]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGTTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGTGCTGTTATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTCA
TGAGCTCAGGTAGCTTATCAATCGACATTGCGCTTGGAGCAGGTGGCTATCCTAAGGGCCGTATCATTGAGATTTACGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCTCTACACGCAGTAGCTCAAGCCCAGAAAGATGGTGGTATTGCTGCCTTTAT
CGATGCGGAGCATGCCTTGGATCCAGCCTATGCGGCGGCTCTTGGTGTCAATATTGATGAGTTACTATTGTCACAGCCAG
ACTCAGGGGAACAAGGTCTTGAAATTGCAGGCAAGCTGATCGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATTGACGGTGATATCGGTGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCA
GGCTATGCGCAAACTCGGTGCATCCATCAACAAAACTAAGACAGTAGCTATTTTCATCAACCAATTACGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCTGAAACAACGCCTGGTGGACGTGCGCTTAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACACAAATCAAAGGAACAGGTGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAGAA
CAAGGTGGCTCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGGGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAGATACGTGTTCATTATGGCTT
GATTGAAGCAGATGGAGTTGAAGAAGTTGCGACCGAAGAAGCTCCTGTTGTTGCGGAAGAAATCCAAGATGTTATCCTAG
ATCTTGATGGCGGTATTGAATTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SNG0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

85.938

100

0.862
  recA Streptococcus pyogenes NZ131

84.856

100

0.849
  recA Streptococcus pneumoniae R6

83.161

100

0.838
  recA Streptococcus pneumoniae Rx1

83.161

100

0.838
  recA Streptococcus pneumoniae D39

83.161

100

0.838
  recA Streptococcus pneumoniae TIGR4

83.161

100

0.838
  recA Streptococcus mitis NCTC 12261

83.77

99.739

0.836
  recA Streptococcus mitis SK321

82.984

99.739

0.828
  recA Lactococcus lactis subsp. cremoris KW2

75.143

91.384

0.687
  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

85.901

0.585
  recA Acinetobacter baumannii D1279779

60.116

90.339

0.543
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae strain FA1090

62.236

86.423

0.538
  recA Pseudomonas stutzeri DSM 10701

57.224

92.167

0.527
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

87.206

0.527
  recA Acinetobacter baylyi ADP1

61.538

84.856

0.522
  recA Vibrio cholerae strain A1552

61.538

84.856

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

84.856

0.522
  recA Glaesserella parasuis strain SC1401

60.923

84.856

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.334

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.423

0.507
  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.768

0.501
  recA Helicobacter pylori 26695

57.879

86.162

0.499
  recA Helicobacter pylori strain NCTC11637

57.879

86.162

0.499

Multiple sequence alignment