Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQM93_RS09230 Genome accession   NZ_LS483390
Coordinates   1726446..1727612 (-) Length   388 a.a.
NCBI ID   WP_001085462.1    Uniprot ID   A0A0B7KZM2
Organism   Streptococcus pneumoniae strain NCTC13276     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1720350..1742757 1726446..1727612 within 0


Gene organization within MGE regions


Location: 1720350..1742757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM93_RS09185 (NCTC13276_01762) - 1720350..1720547 (-) 198 WP_000890144.1 hypothetical protein -
  DQM93_RS09190 (NCTC13276_01763) - 1720551..1721345 (-) 795 WP_001101210.1 hypothetical protein -
  DQM93_RS09195 (NCTC13276_01764) - 1721753..1722178 (-) 426 WP_000204065.1 hypothetical protein -
  DQM93_RS09200 (NCTC13276_01765) - 1722307..1722666 (-) 360 WP_000749822.1 ImmA/IrrE family metallo-endopeptidase -
  DQM93_RS09205 (NCTC13276_01766) - 1722712..1722918 (-) 207 WP_000366091.1 hypothetical protein -
  DQM93_RS09210 - 1722905..1723078 (-) 174 WP_000289349.1 helix-turn-helix domain-containing protein -
  DQM93_RS09215 (NCTC13276_01767) lytA 1723437..1724393 (-) 957 WP_000405235.1 N-acetylmuramoyl-L-alanine amidase LytA -
  DQM93_RS09220 (NCTC13276_01768) - 1724769..1726139 (-) 1371 WP_001036271.1 MATE family efflux transporter -
  DQM93_RS09230 (NCTC13276_01769) recA 1726446..1727612 (-) 1167 WP_001085462.1 recombinase RecA Machinery gene
  DQM93_RS09235 (NCTC13276_01770) cinA 1727667..1728923 (-) 1257 WP_000642700.1 competence/damage-inducible protein A Machinery gene
  DQM93_RS09240 (NCTC13276_01771) brpA 1729008..1730024 (-) 1017 WP_000239282.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQM93_RS09245 (NCTC13276_01772) - 1730032..1730550 (-) 519 WP_000455537.1 GNAT family N-acetyltransferase -
  DQM93_RS09250 (NCTC13276_01773) tsaE 1730540..1730983 (-) 444 WP_000288232.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQM93_RS09255 (NCTC13276_01774) comM 1731069..1731689 (-) 621 WP_000839908.1 hypothetical protein Regulator
  DQM93_RS09265 (NCTC13276_01775) - 1732072..1732935 (-) 864 WP_001093641.1 helix-turn-helix domain-containing protein -
  DQM93_RS11715 (NCTC13276_01776) - 1733127..1733297 (+) 171 WP_001227862.1 PhrA family quorum-sensing system peptide -
  DQM93_RS09275 (NCTC13276_01777) pneA1 1733400..1733624 (+) 225 WP_000181087.1 two-peptide bacteriocin subunit PneA1 -
  DQM93_RS09280 (NCTC13276_01778) pneA2 1733631..1733819 (+) 189 WP_000786759.1 two-peptide bacteriocin subunit PneA2 -
  DQM93_RS09285 (NCTC13276_01779) - 1733935..1736925 (+) 2991 WP_000875575.1 type 2 lanthipeptide synthetase LanM family protein -
  DQM93_RS09290 (NCTC13276_01780) - 1737275..1737979 (+) 705 WP_001033170.1 flavodoxin family protein -
  DQM93_RS09295 (NCTC13276_01781) - 1737960..1738889 (+) 930 WP_000912954.1 M50 family metallopeptidase -
  DQM93_RS09300 (NCTC13276_01782) - 1738886..1740994 (+) 2109 WP_000701298.1 peptidase domain-containing ABC transporter -
  DQM93_RS09305 (NCTC13276_01783) - 1741018..1742757 (+) 1740 WP_000699969.1 S8 family peptidase -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41949.78 Da        Isoelectric Point: 4.8403

>NTDB_id=1139926 DQM93_RS09230 WP_001085462.1 1726446..1727612(-) (recA) [Streptococcus pneumoniae strain NCTC13276]
MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEEVPLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=1139926 DQM93_RS09230 WP_001085462.1 1726446..1727612(-) (recA) [Streptococcus pneumoniae strain NCTC13276]
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAAAAGGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTAGCTCTTGACATTGCCCTTGGCTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGCCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCGGGAAAATTGATTGACTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTTCCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCATGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGCGCCTCTATCAATAAAACCAAAACAATTGCCATTTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACACCGGGCGGACGTGCTTTGAAATTCTATGCTTCAGTCCGCTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGATCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATTATCAAAAAAGCAGGGGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTCTAAATTTGGCTTGAT
TGATGGAGAAGAAGTTTCAGAACAAGATACTGAAAACAAAAAAGATGAGCCAAAGAAAGAAGAAGCAGTGAATGAAGAAG
TTCCGCTTGACTTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7KZM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae Rx1

100

100

1
  recA Streptococcus pneumoniae D39

100

100

1
  recA Streptococcus pneumoniae R6

100

100

1
  recA Streptococcus pneumoniae TIGR4

100

100

1
  recA Streptococcus mitis NCTC 12261

94.072

100

0.941
  recA Streptococcus mitis SK321

93.557

100

0.936
  recA Streptococcus mutans UA159

83.204

99.742

0.83
  recA Streptococcus pyogenes NZ131

90.725

88.918

0.807
  recA Lactococcus lactis subsp. cremoris KW2

78.409

90.722

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

67.919

89.175

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

68.788

85.052

0.585
  recA Glaesserella parasuis strain SC1401

57.641

96.134

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.706

83.247

0.539
  recA Neisseria gonorrhoeae MS11

60.177

87.371

0.526
  recA Neisseria gonorrhoeae strain FA1090

60.177

87.371

0.526
  recA Neisseria gonorrhoeae MS11

60.177

87.371

0.526
  recA Vibrio cholerae strain A1552

62.848

83.247

0.523
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

83.247

0.523
  recA Acinetobacter baumannii D1279779

61.963

84.021

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

85.309

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.824

87.629

0.515
  recA Acinetobacter baylyi ADP1

61.35

84.021

0.515
  recA Helicobacter pylori 26695

56.125

90.464

0.508
  recA Helicobacter pylori strain NCTC11637

56.125

90.464

0.508
  recA Pseudomonas stutzeri DSM 10701

59.509

84.021

0.5
  recA Ralstonia pseudosolanacearum GMI1000

59.937

81.701

0.49

Multiple sequence alignment