Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQM47_RS09480 Genome accession   NZ_LS483360
Coordinates   1834903..1836039 (-) Length   378 a.a.
NCBI ID   WP_023610714.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10876     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1829903..1841039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM47_RS09455 (NCTC10876_01878) - 1831126..1832685 (-) 1560 WP_011055088.1 membrane protein -
  DQM47_RS09460 (NCTC10876_01880) - 1833099..1833404 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  DQM47_RS09465 (NCTC10876_01881) ruvX 1833416..1833835 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  DQM47_RS09470 (NCTC10876_01882) - 1833832..1834101 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  DQM47_RS09475 (NCTC10876_01883) spx 1834214..1834612 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  DQM47_RS09480 (NCTC10876_01884) recA 1834903..1836039 (-) 1137 WP_023610714.1 recombinase RecA Machinery gene
  DQM47_RS09485 (NCTC10876_01885) cinA 1836128..1837399 (-) 1272 WP_023610745.1 competence/damage-inducible protein A Machinery gene
  DQM47_RS09490 (NCTC10876_01886) - 1837468..1838028 (-) 561 WP_023610776.1 DNA-3-methyladenine glycosylase I -
  DQM47_RS09495 (NCTC10876_01887) ruvA 1838038..1838634 (-) 597 WP_002992186.1 Holliday junction branch migration protein RuvA -
  DQM47_RS09500 (NCTC10876_01888) - 1838636..1839856 (-) 1221 WP_002991361.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40573.19 Da        Isoelectric Point: 4.9639

>NTDB_id=1138489 DQM47_RS09480 WP_023610714.1 1834903..1836039(-) (recA) [Streptococcus pyogenes strain NCTC10876]
MAKKLKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPQLFDEIDRKVRVKFGLLEESEAESAMAVASEETDDLALDLDNGIEIED

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=1138489 DQM47_RS09480 WP_023610714.1 1834903..1836039(-) (recA) [Streptococcus pyogenes strain NCTC10876]
TTGGCAAAAAAATTAAAAAAGAATGAAGAAATCACTAAGAAGTTTGGTGACGAACGTCGCAAAGCTCTTGATGATGCTTT
GAAAAATATTGAAAAAGATTTCGGTAAGGGCGCAGTGATGCGATTAGGAGAACGTGCAGAGCAAAAAGTTCAGGTTATGA
GTTCAGGAAGTCTAGCTCTTGATATTGCGCTTGGAGCTGGTGGTTATCCTAAAGGACGTATCATCGAAATCTATGGTCCA
GAGTCTTCCGGTAAAACGACTGTGGCTTTACATGCTGTAGCACAAGCTCAAAAAGAAGGTGGAATCGCAGCCTTTATCGA
TGCCGAGCATGCGCTTGATCCAGCTTATGCTGCTGCGCTTGGGGTTAATATTGATGAACTCCTCTTGTCTCAACCAGATT
CTGGAGAACAAGGACTTGAAATTGCAGGTAAATTGATTGATTCTGGTGCGGTTGACCTGGTTGTTGTCGATTCAGTAGCA
GCTTTAGTGCCACGTGCTGAAATTGATGGTGATATTGGCGATAGCCATGTCGGATTGCAAGCACGTATGATGAGTCAGGC
CATGCGTAAATTATCAGCTTCTATTAATAAAACAAAAACTATCGCTATCTTTATTAACCAATTGCGTGAAAAAGTTGGTG
TGATGTTTGGAAATCCTGAAACAACACCAGGTGGTCGAGCTTTGAAATTCTATGCTTCTGTTCGGTTGGATGTGCGTGGA
ACAACTCAAATTAAAGGAACTGGTGACCAAAAAGATAGCAGTATTGGTAAGGAGACCAAAATAAAGGTTGTTAAAAACAA
GGTCGCTCCGCCATTTAAGGTAGCAGAAGTTGAAATCATGTATGGGGAAGGTATTTCTCGTACAGGGGAGCTTGTGAAAA
TTGCTTCTGATTTGGACATTATCCAAAAAGCAGGTGCTTGGTTCTCTTATAATGGTGAGAAGATTGGCCAAGGTTCTGAA
AATGCTAAGCGTTATTTGGCCGATCATCCACAATTGTTTGATGAAATCGACCGTAAAGTACGTGTTAAATTTGGTTTGCT
TGAAGAAAGCGAAGCAGAATCTGCTATGGCAGTAGCATCAGAAGAAACCGATGATCTTGCTTTAGATTTAGATAATGGTA
TTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

99.471

100

0.995
  recA Streptococcus mutans UA159

87.467

100

0.886
  recA Streptococcus mitis NCTC 12261

85.34

100

0.862
  recA Streptococcus pneumoniae Rx1

84.156

100

0.857
  recA Streptococcus pneumoniae D39

84.156

100

0.857
  recA Streptococcus pneumoniae R6

84.156

100

0.857
  recA Streptococcus pneumoniae TIGR4

84.156

100

0.857
  recA Streptococcus mitis SK321

84.777

100

0.854
  recA Lactococcus lactis subsp. cremoris KW2

78.754

93.386

0.735
  recA Latilactobacillus sakei subsp. sakei 23K

71.515

87.302

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

87.037

0.593
  recA Acinetobacter baylyi ADP1

60

92.593

0.556
  recA Acinetobacter baumannii D1279779

59.49

93.386

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.018

89.153

0.553
  recA Glaesserella parasuis strain SC1401

56.749

96.032

0.545
  recA Vibrio cholerae strain A1552

58.286

92.593

0.54
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.286

92.593

0.54
  recA Neisseria gonorrhoeae MS11

61.631

87.566

0.54
  recA Neisseria gonorrhoeae MS11

61.631

87.566

0.54
  recA Neisseria gonorrhoeae strain FA1090

61.631

87.566

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

85.45

0.534
  recA Pseudomonas stutzeri DSM 10701

56.897

92.063

0.524
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

87.566

0.516
  recA Helicobacter pylori 26695

58.084

88.36

0.513
  recA Helicobacter pylori strain NCTC11637

58.084

88.36

0.513
  recA Ralstonia pseudosolanacearum GMI1000

58.991

83.862

0.495

Multiple sequence alignment