Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | DQL13_RS09400 | Genome accession | NZ_LS483354 |
| Coordinates | 1977685..1978821 (-) | Length | 378 a.a. |
| NCBI ID | WP_012516441.1 | Uniprot ID | - |
| Organism | Streptococcus equi subsp. zooepidemicus strain NCTC11606 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1948333..1982967 | 1977685..1978821 | within | 0 |
| IScluster/Tn | 1974559..1982967 | 1977685..1978821 | within | 0 |
Gene organization within MGE regions
Location: 1948333..1982967
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL13_RS09245 (NCTC11606_01852) | - | 1948333..1948974 (+) | 642 | WP_012516411.1 | deoxynucleoside kinase | - |
| DQL13_RS09250 (NCTC11606_01853) | - | 1949256..1950260 (+) | 1005 | WP_012516412.1 | hypothetical protein | - |
| DQL13_RS09255 (NCTC11606_01854) | - | 1950311..1951114 (-) | 804 | WP_012516413.1 | ABC transporter ATP-binding protein | - |
| DQL13_RS09260 (NCTC11606_01855) | - | 1951123..1952007 (-) | 885 | WP_012516414.1 | ABC transporter permease | - |
| DQL13_RS09265 (NCTC11606_01856) | - | 1952117..1953079 (-) | 963 | WP_012516415.1 | ABC transporter substrate-binding protein | - |
| DQL13_RS09270 (NCTC11606_01857) | - | 1953106..1954071 (-) | 966 | WP_041785774.1 | ABC transporter substrate-binding protein | - |
| DQL13_RS09275 (NCTC11606_01858) | - | 1954477..1955430 (-) | 954 | WP_012514856.1 | IS30 family transposase | - |
| DQL13_RS09280 | - | 1955616..1957014 (+) | 1399 | Protein_1754 | ISNCY family transposase | - |
| DQL13_RS09285 (NCTC11606_01861) | ssbA | 1957181..1957576 (-) | 396 | WP_012516417.1 | single-stranded DNA-binding protein | Machinery gene |
| DQL13_RS09290 (NCTC11606_01862) | - | 1957687..1958400 (+) | 714 | WP_041785777.1 | class I SAM-dependent methyltransferase | - |
| DQL13_RS09295 (NCTC11606_01863) | ytpR | 1958702..1959328 (-) | 627 | WP_012516419.1 | YtpR family tRNA-binding protein | - |
| DQL13_RS09300 (NCTC11606_01864) | - | 1959343..1959660 (-) | 318 | WP_012516420.1 | thioredoxin family protein | - |
| DQL13_RS09305 (NCTC11606_01865) | - | 1959657..1959941 (-) | 285 | WP_021321209.1 | DUF4651 domain-containing protein | - |
| DQL13_RS09310 (NCTC11606_01866) | pepA | 1960345..1961412 (+) | 1068 | WP_111721745.1 | glutamyl aminopeptidase | - |
| DQL13_RS09315 (NCTC11606_01867) | proC | 1961496..1962269 (+) | 774 | WP_012516423.1 | pyrroline-5-carboxylate reductase | - |
| DQL13_RS09320 (NCTC11606_01868) | - | 1962504..1962941 (-) | 438 | WP_012516424.1 | hypothetical protein | - |
| DQL13_RS09325 (NCTC11606_01869) | - | 1962971..1963645 (-) | 675 | WP_012516425.1 | CPBP family intramembrane glutamic endopeptidase | - |
| DQL13_RS09330 (NCTC11606_01870) | - | 1963655..1964107 (-) | 453 | WP_012516426.1 | hypothetical protein | - |
| DQL13_RS09335 (NCTC11606_01871) | - | 1964109..1964312 (-) | 204 | WP_012516427.1 | helix-turn-helix transcriptional regulator | - |
| DQL13_RS09340 (NCTC11606_01872) | yaaA | 1964743..1965474 (+) | 732 | WP_012516428.1 | peroxide stress protein YaaA | - |
| DQL13_RS09345 (NCTC11606_01873) | nrdG | 1965935..1966549 (-) | 615 | WP_012516430.1 | anaerobic ribonucleoside-triphosphate reductase activating protein | - |
| DQL13_RS09350 (NCTC11606_01874) | - | 1966559..1967053 (-) | 495 | WP_012516431.1 | GNAT family N-acetyltransferase | - |
| DQL13_RS09355 (NCTC11606_01875) | - | 1967066..1968001 (-) | 936 | WP_012516432.1 | Gfo/Idh/MocA family protein | - |
| DQL13_RS09905 (NCTC11606_01876) | - | 1968029..1968175 (-) | 147 | WP_012516433.1 | hypothetical protein | - |
| DQL13_RS09360 (NCTC11606_01877) | nrdD | 1968281..1970479 (-) | 2199 | WP_012516434.1 | anaerobic ribonucleoside-triphosphate reductase | - |
| DQL13_RS09365 (NCTC11606_01878) | - | 1970575..1972134 (-) | 1560 | WP_041785782.1 | ArnT family glycosyltransferase | - |
| DQL13_RS09370 (NCTC11606_01879) | - | 1972686..1972985 (-) | 300 | WP_012516437.1 | DUF1292 domain-containing protein | - |
| DQL13_RS09375 (NCTC11606_01880) | ruvX | 1972995..1973414 (-) | 420 | WP_111721746.1 | Holliday junction resolvase RuvX | - |
| DQL13_RS09380 (NCTC11606_01881) | - | 1973411..1973680 (-) | 270 | WP_012516439.1 | IreB family regulatory phosphoprotein | - |
| DQL13_RS09385 (NCTC11606_01882) | spx | 1973793..1974191 (-) | 399 | WP_012516440.1 | transcriptional regulator Spx | - |
| DQL13_RS09390 | - | 1974559..1976130 (-) | 1572 | Protein_1777 | IS3 family transposase | - |
| DQL13_RS09395 (NCTC11606_01887) | - | 1976205..1977547 (+) | 1343 | WP_165626751.1 | IS3 family transposase | - |
| DQL13_RS09400 (NCTC11606_01888) | recA | 1977685..1978821 (-) | 1137 | WP_012516441.1 | recombinase RecA | Machinery gene |
| DQL13_RS09405 (NCTC11606_01889) | cinA | 1978915..1980186 (-) | 1272 | WP_012516442.1 | competence/damage-inducible protein A | Machinery gene |
| DQL13_RS09410 (NCTC11606_01890) | - | 1980872..1981162 (-) | 291 | WP_012516443.1 | hypothetical protein | - |
| DQL13_RS09415 (NCTC11606_01891) | - | 1981156..1981728 (-) | 573 | WP_012516444.1 | phosphlipase A2 SlaA | - |
| DQL13_RS09420 (NCTC11606_01892) | - | 1982014..1982967 (+) | 954 | WP_012516445.1 | IS30 family transposase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 40558.21 Da Isoelectric Point: 4.9679
>NTDB_id=1138188 DQL13_RS09400 WP_012516441.1 1977685..1978821(-) (recA) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
MAKKVKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPELFDEIDHKVRVKFGLLEDTEESAAVDPAAAKADELVLELDDAIEIED
MAKKVKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPELFDEIDHKVRVKFGLLEDTEESAAVDPAAAKADELVLELDDAIEIED
Nucleotide
Download Length: 1137 bp
>NTDB_id=1138188 DQL13_RS09400 WP_012516441.1 1977685..1978821(-) (recA) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
TTGGCAAAAAAAGTTAAAAAAAATGAAGAAATCACCAAAAAATTTGGTGATGAACGTCGTAAAGCACTTGATGATGCGTT
AAAGAACATCGAAAAAGATTTTGGTAAGGGTGCGGTTATGCGCCTTGGTGAGCGTGCAGAGCAAAAGGTTCAGGTGATGA
GTTCGGGCAGTCTTGCTTTAGACATTGCGCTTGGAGCAGGTGGCTATCCTAAAGGGCGTATTATTGAAATCTATGGACCA
GAGTCTTCTGGTAAAACAACAGTTGCCCTGCATGCAGTAGCGCAGGCTCAAAAAGAAGGTGGTATTGCAGCCTTCATTGA
TGCGGAGCATGCCTTGGATCCTGCCTATGCTGCGGCGCTAGGTGTTAATATTGATGAGCTGCTTTTGTCACAGCCGGATT
CTGGTGAGCAAGGACTTGAGATAGCAGGTAAATTGATTGATTCTGGTGCTGTTGATTTGGTTGTCGTTGACTCTGTTGCA
GCTTTAGTGCCTCGTGCTGAGATTGATGGTGATATTGGTGATAACCACGTTGGTCTGCAGGCTCGTATGATGAGTCAGGC
AATGCGTAAGCTTTCAGCCTCAATCAATAAAACCAAGACAATTGCGATCTTTATTAACCAGCTGCGTGAAAAGGTAGGGG
TTATGTTTGGTAATCCAGAGACGACACCAGGTGGTCGTGCTTTGAAATTCTATGCTTCTGTCCGTCTAGATGTTCGTGGA
ACAACACAAATAAAAGGAACTGGAGATCAAAAAGACAGTAGTATCGGTAAGGAAACCAAGATTAAGGTTGTTAAGAATAA
GGTTGCTCCGCCATTTAAGGTGGCTGAGGTTGAAATCATGTATGGAGAAGGCATCTCACGTACAGGTGAGCTGATTAAAA
TTGCTTCAGATTTAGACATTATTCAAAAAGCTGGTGCTTGGTTCTCTTATAACGGTGAAAAAATTGGTCAGGGCTCTGAA
AATGCCAAGAGATATTTGGCTGATCACCCAGAGCTGTTTGATGAGATTGACCATAAGGTGCGTGTTAAATTTGGCTTGCT
TGAAGATACCGAGGAAAGTGCAGCTGTAGATCCAGCTGCAGCCAAAGCAGATGAGCTGGTTTTAGAGCTAGACGATGCCA
TTGAAATTGAGGATTAG
TTGGCAAAAAAAGTTAAAAAAAATGAAGAAATCACCAAAAAATTTGGTGATGAACGTCGTAAAGCACTTGATGATGCGTT
AAAGAACATCGAAAAAGATTTTGGTAAGGGTGCGGTTATGCGCCTTGGTGAGCGTGCAGAGCAAAAGGTTCAGGTGATGA
GTTCGGGCAGTCTTGCTTTAGACATTGCGCTTGGAGCAGGTGGCTATCCTAAAGGGCGTATTATTGAAATCTATGGACCA
GAGTCTTCTGGTAAAACAACAGTTGCCCTGCATGCAGTAGCGCAGGCTCAAAAAGAAGGTGGTATTGCAGCCTTCATTGA
TGCGGAGCATGCCTTGGATCCTGCCTATGCTGCGGCGCTAGGTGTTAATATTGATGAGCTGCTTTTGTCACAGCCGGATT
CTGGTGAGCAAGGACTTGAGATAGCAGGTAAATTGATTGATTCTGGTGCTGTTGATTTGGTTGTCGTTGACTCTGTTGCA
GCTTTAGTGCCTCGTGCTGAGATTGATGGTGATATTGGTGATAACCACGTTGGTCTGCAGGCTCGTATGATGAGTCAGGC
AATGCGTAAGCTTTCAGCCTCAATCAATAAAACCAAGACAATTGCGATCTTTATTAACCAGCTGCGTGAAAAGGTAGGGG
TTATGTTTGGTAATCCAGAGACGACACCAGGTGGTCGTGCTTTGAAATTCTATGCTTCTGTCCGTCTAGATGTTCGTGGA
ACAACACAAATAAAAGGAACTGGAGATCAAAAAGACAGTAGTATCGGTAAGGAAACCAAGATTAAGGTTGTTAAGAATAA
GGTTGCTCCGCCATTTAAGGTGGCTGAGGTTGAAATCATGTATGGAGAAGGCATCTCACGTACAGGTGAGCTGATTAAAA
TTGCTTCAGATTTAGACATTATTCAAAAAGCTGGTGCTTGGTTCTCTTATAACGGTGAAAAAATTGGTCAGGGCTCTGAA
AATGCCAAGAGATATTTGGCTGATCACCCAGAGCTGTTTGATGAGATTGACCATAAGGTGCGTGTTAAATTTGGCTTGCT
TGAAGATACCGAGGAAAGTGCAGCTGTAGATCCAGCTGCAGCCAAAGCAGATGAGCTGGTTTTAGAGCTAGACGATGCCA
TTGAAATTGAGGATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.