Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQL05_RS08365 Genome accession   NZ_LS483322
Coordinates   1656750..1657886 (-) Length   378 a.a.
NCBI ID   WP_109828910.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12066     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1651750..1662886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL05_RS08340 (NCTC12066_01649) - 1652972..1654531 (-) 1560 WP_002992833.1 membrane protein -
  DQL05_RS08345 (NCTC12066_01651) - 1654944..1655249 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  DQL05_RS08350 (NCTC12066_01652) ruvX 1655261..1655680 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  DQL05_RS08355 (NCTC12066_01653) - 1655677..1655946 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  DQL05_RS08360 (NCTC12066_01654) spx 1656061..1656459 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  DQL05_RS08365 (NCTC12066_01655) recA 1656750..1657886 (-) 1137 WP_109828910.1 recombinase RecA Machinery gene
  DQL05_RS08370 (NCTC12066_01656) cinA 1657975..1659246 (-) 1272 WP_011055089.1 competence/damage-inducible protein A Machinery gene
  DQL05_RS08375 (NCTC12066_01657) - 1659315..1659875 (-) 561 WP_002992183.1 DNA-3-methyladenine glycosylase I -
  DQL05_RS08380 (NCTC12066_01658) ruvA 1659885..1660481 (-) 597 WP_002992186.1 Holliday junction branch migration protein RuvA -
  DQL05_RS08385 (NCTC12066_01659) - 1660483..1661703 (-) 1221 WP_002992187.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40659.24 Da        Isoelectric Point: 4.9004

>NTDB_id=1136445 DQL05_RS08365 WP_109828910.1 1656750..1657886(-) (recA) [Streptococcus pyogenes strain NCTC12066]
MAKKLKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPRGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPQLFDEIDRKVRVKFGLLEESEEESAMAVASEETDDLALDLDNGIEIED

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=1136445 DQL05_RS08365 WP_109828910.1 1656750..1657886(-) (recA) [Streptococcus pyogenes strain NCTC12066]
TTGGCAAAAAAATTAAAAAAGAATGAAGAAATCACTAAGAAGTTTGGTGACGAACGTCGCAAAGCTCTTGATGATGCTTT
GAAAAATATTGAAAAAGATTTCGGTAAGGGCGCAGTGATGCGATTAGGAGAACGTGCAGAGCAAAAAGTTCAGGTTATGA
GTTCAGGAAGTCTAGCTCTTGATATTGCGCTTGGAGCTGGTGGTTATCCTAGAGGACGTATCATCGAAATCTATGGTCCA
GAGTCTTCCGGTAAAACGACTGTGGCTTTACATGCTGTAGCACAAGCTCAAAAAGAAGGTGGAATCGCAGCCTTTATCGA
TGCCGAGCATGCGCTTGATCCAGCTTATGCTGCTGCGCTTGGGGTTAATATTGATGAACTCCTCTTGTCTCAACCAGATT
CTGGAGAACAAGGACTTGAAATTGCAGGTAAATTGATTGATTCTGGTGCGGTTGATCTGGTTGTTGTCGATTCAGTAGCA
GCTTTAGTGCCACGTGCTGAAATTGATGGTGATATTGGCGATAGCCATGTCGGATTGCAAGCACGTATGATGAGTCAGGC
CATGCGTAAATTATCAGCTTCTATTAATAAAACAAAAACTATCGCTATCTTTATTAACCAATTGCGTGAAAAAGTTGGTG
TGATGTTTGGAAATCCTGAAACAACACCAGGTGGTCGAGCTTTGAAATTCTATGCTTCTGTTCGGTTGGATGTGCGTGGA
ACAACTCAAATTAAAGGAACTGGTGACCAAAAAGATAGCAGTATTGGTAAGGAGACCAAAATCAAGGTTGTTAAAAACAA
GGTCGCTCCGCCATTTAAGGTAGCAGAAGTTGAAATCATGTATGGGGAAGGTATTTCTCGTACAGGGGAGCTTGTGAAAA
TTGCTTCTGATTTGGACATTATCCAAAAAGCAGGTGCTTGGTTCTCTTATAATGGTGAGAAGATTGGCCAAGGTTCTGAA
AATGCTAAGCGTTATTTGGCCGATCATCCACAATTGTTTGATGAAATCGACCGTAAAGTACGTGTTAAATTTGGTTTGCT
TGAAGAAAGCGAAGAAGAATCTGCTATGGCAGTAGCATCAGAAGAAACCGATGATCTTGCTTTAGATTTAGATAATGGTA
TTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

99.471

100

0.995
  recA Streptococcus mutans UA159

87.206

100

0.884
  recA Streptococcus mitis NCTC 12261

85.079

100

0.86
  recA Streptococcus pneumoniae Rx1

84.156

100

0.857
  recA Streptococcus pneumoniae D39

84.156

100

0.857
  recA Streptococcus pneumoniae R6

84.156

100

0.857
  recA Streptococcus pneumoniae TIGR4

84.156

100

0.857
  recA Streptococcus mitis SK321

85.039

100

0.857
  recA Lactococcus lactis subsp. cremoris KW2

78.47

93.386

0.733
  recA Latilactobacillus sakei subsp. sakei 23K

70.92

89.153

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

68.389

87.037

0.595
  recA Acinetobacter baumannii D1279779

59.207

93.386

0.553
  recA Acinetobacter baylyi ADP1

59.714

92.593

0.553
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.721

89.153

0.55
  recA Neisseria gonorrhoeae MS11

60.35

90.741

0.548
  recA Neisseria gonorrhoeae MS11

60.35

90.741

0.548
  recA Neisseria gonorrhoeae strain FA1090

60.35

90.741

0.548
  recA Vibrio cholerae strain A1552

58.286

92.593

0.54
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.286

92.593

0.54
  recA Glaesserella parasuis strain SC1401

59.706

89.947

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

85.45

0.537
  recA Pseudomonas stutzeri DSM 10701

56.609

92.063

0.521
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

87.566

0.513
  recA Ralstonia pseudosolanacearum GMI1000

58.133

87.831

0.511
  recA Helicobacter pylori strain NCTC11637

57.784

88.36

0.511
  recA Helicobacter pylori 26695

57.784

88.36

0.511

Multiple sequence alignment