Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O987_RS27380 Genome accession   NZ_CP006704
Coordinates   6037774..6038883 (-) Length   369 a.a.
NCBI ID   WP_003060050.1    Uniprot ID   -
Organism   Comamonas testosteroni TK102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6032774..6043883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O987_RS27360 (O987_28385) cycA 6033823..6035235 (+) 1413 WP_003060059.1 D-serine/D-alanine/glycine transporter -
  O987_RS27365 (O987_28390) yddG 6035373..6036293 (+) 921 WP_043375940.1 aromatic amino acid DMT transporter YddG -
  O987_RS27370 (O987_28395) - 6036319..6037053 (-) 735 WP_043375942.1 hypothetical protein -
  O987_RS27375 (O987_28400) recX 6037113..6037583 (-) 471 WP_003060052.1 recombination regulator RecX -
  O987_RS27380 (O987_28405) recA 6037774..6038883 (-) 1110 WP_003060050.1 recombinase RecA Machinery gene
  O987_RS27385 (O987_28410) - 6039022..6039513 (+) 492 WP_003060049.1 MarR family winged helix-turn-helix transcriptional regulator -
  O987_RS27390 (O987_28415) - 6039623..6040300 (+) 678 WP_003060046.1 response regulator transcription factor -
  O987_RS27395 (O987_28422) - 6040406..6041848 (+) 1443 WP_043375945.1 sensor histidine kinase -
  O987_RS27400 (O987_28425) - 6042069..6043046 (+) 978 WP_003060043.1 tripartite tricarboxylate transporter substrate-binding protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39147.05 Da        Isoelectric Point: 5.3847

>NTDB_id=113606 O987_RS27380 WP_003060050.1 6037774..6038883(-) (recA) [Comamonas testosteroni TK102]
MNAIAKTNDANSEKAKALAAALAQIEKQFGKGTIMKLGEGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSG
KTTLTLQVIAEMQKQAGTCAFIDAEHALDTGYAQKLGVNLNDLLISQPDTGEQALEICDSLVRSGAVDLIVIDSVAALTP
KAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLRE
NPALAIEIENKVRDSLGIKLLPMDGAAAAEAKPAKGGKGKVDKDGVIEA

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=113606 O987_RS27380 WP_003060050.1 6037774..6038883(-) (recA) [Comamonas testosteroni TK102]
ATGAACGCCATCGCCAAGACCAACGACGCCAACAGCGAAAAAGCCAAAGCCCTGGCAGCCGCCCTGGCCCAGATCGAAAA
GCAGTTCGGCAAGGGCACCATCATGAAGCTCGGCGAAGGTGAGGCCATTGAAGACATCCAGGTCGTCTCCACCGGCTCGC
TGGGCCTGGATATCGCACTGGGCGTGGGTGGTCTGCCGCGTGGTCGCGTGATTGAAATCTACGGTCCAGAATCCTCGGGC
AAGACCACGCTGACGCTGCAGGTCATTGCCGAGATGCAAAAGCAGGCCGGCACCTGTGCCTTCATCGATGCCGAACACGC
ACTCGACACCGGCTATGCCCAGAAGCTGGGCGTGAACCTCAACGATCTGTTGATCAGCCAGCCCGACACCGGTGAGCAGG
CCCTGGAAATCTGCGACAGCCTGGTGCGCTCGGGTGCCGTGGATCTGATCGTCATCGACTCGGTGGCCGCATTGACGCCC
AAGGCCGAAATCGAAGGCGAGATGGGCGACGCCCTGCCCGGCCTGCAGGCCCGTCTGATGAGCCAGGCCCTGCGCAAGCT
GACGGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCT
CGCCCGAGACCACCACCGGCGGCAATGCGCTGAAGTTCTATGCCTCCGTGCGTCTGGATATCCGCCGCACCGGCACCATC
AAGAAGGGCGATGAGGCCATCGGCAACGAAACCAAGGTCAAGGTCGTGAAGAACAAGGTCTCGCCTCCCTTCAAGACGGC
CGAGTTCGACATCTTGTTTGGCGAAGGCATCAGCCGCGAAGGCGAGATTCTGGACATGGGCGTGAACGCCAAGATCCTGG
AAAAAAGCGGTGCCTGGTATGCCTACAACGGCGAAAAAATCGGCCAGGGCCGCGACAACTCGCGTGAGTTCCTGCGCGAG
AACCCCGCGCTGGCCATCGAAATCGAGAACAAGGTGCGCGATAGCCTGGGCATCAAGCTGCTGCCCATGGACGGGGCTGC
CGCTGCCGAAGCCAAGCCTGCCAAGGGCGGCAAGGGCAAGGTAGACAAGGACGGTGTGATCGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.902

88.347

0.724
  recA Neisseria gonorrhoeae strain FA1090

69.643

91.057

0.634
  recA Neisseria gonorrhoeae MS11

69.643

91.057

0.634
  recA Neisseria gonorrhoeae MS11

69.643

91.057

0.634
  recA Pseudomonas stutzeri DSM 10701

71.472

88.347

0.631
  recA Glaesserella parasuis strain SC1401

71.605

87.805

0.629
  recA Acinetobacter baumannii D1279779

69.632

88.347

0.615
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.632

88.347

0.615
  recA Acinetobacter baylyi ADP1

69.632

88.347

0.615
  recA Vibrio cholerae strain A1552

69.632

88.347

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.082

92.683

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

89.431

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

88.618

0.569
  recA Helicobacter pylori strain NCTC11637

64.024

88.889

0.569
  recA Helicobacter pylori 26695

64.024

88.889

0.569
  recA Streptococcus mutans UA159

57.5

97.561

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

62.162

90.244

0.561
  recA Streptococcus mitis SK321

59.42

93.496

0.556
  recA Lactococcus lactis subsp. cremoris KW2

60.714

91.057

0.553
  recA Streptococcus mitis NCTC 12261

59.13

93.496

0.553
  recA Streptococcus pneumoniae Rx1

59.184

92.954

0.55
  recA Streptococcus pneumoniae D39

59.184

92.954

0.55
  recA Streptococcus pneumoniae R6

59.184

92.954

0.55
  recA Streptococcus pneumoniae TIGR4

59.184

92.954

0.55
  recA Streptococcus pyogenes NZ131

60.597

90.786

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

89.431

0.537

Multiple sequence alignment