Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQL89_RS08125 Genome accession   NZ_LS483313
Coordinates   1718131..1719195 (-) Length   354 a.a.
NCBI ID   WP_002480731.1    Uniprot ID   A0AAE5M2R3
Organism   Staphylococcus simulans strain NCTC11046     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1713131..1724195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL89_RS08105 (NCTC11046_01666) - 1713980..1714198 (+) 219 WP_002480735.1 hypothetical protein -
  DQL89_RS08110 (NCTC11046_01667) - 1714303..1715133 (-) 831 WP_002480734.1 LysR family transcriptional regulator -
  DQL89_RS08115 (NCTC11046_01668) - 1715256..1716251 (+) 996 WP_023015671.1 YeiH family protein -
  DQL89_RS08120 (NCTC11046_01669) rny 1716372..1717931 (-) 1560 WP_002480732.1 ribonuclease Y -
  DQL89_RS08125 (NCTC11046_01670) recA 1718131..1719195 (-) 1065 WP_002480731.1 recombinase RecA Machinery gene
  DQL89_RS08130 (NCTC11046_01671) - 1719364..1720509 (-) 1146 WP_103363879.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  DQL89_RS08135 (NCTC11046_01672) pgsA 1720644..1721225 (-) 582 WP_103363878.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DQL89_RS08140 (NCTC11046_01673) - 1721251..1721649 (-) 399 WP_002480728.1 helix-turn-helix domain-containing protein -
  DQL89_RS08145 (NCTC11046_01674) - 1721671..1722510 (-) 840 WP_023015675.1 DUF3388 domain-containing protein -
  DQL89_RS08150 (NCTC11046_01675) ymfI 1722643..1723347 (-) 705 WP_023015676.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38516.56 Da        Isoelectric Point: 5.3672

>NTDB_id=1135985 DQL89_RS08125 WP_002480731.1 1718131..1719195(-) (recA) [Staphylococcus simulans strain NCTC11046]
MNNERQKALDTVIKNMEKSFGKGAVMKLGDNKARRVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQKQGGIAAFIDAEHALDPVYAEALGVDINNLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNCTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVEHDIVDKSGAWYSYNGDRMGQGKENVKNYLKEHPDVKADIDQ
KLRQKLGIFDGDVEEKEEKEAEKNSENASLFEEE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1135985 DQL89_RS08125 WP_002480731.1 1718131..1719195(-) (recA) [Staphylococcus simulans strain NCTC11046]
TTGAATAATGAACGTCAAAAAGCGCTAGATACTGTAATTAAGAATATGGAGAAATCGTTTGGTAAGGGTGCGGTTATGAA
GTTAGGCGATAACAAAGCACGCCGAGTTTCAAGTGTATCAAGCGGTTCTGTTACATTAGATAATGCCTTAGGAGTAGGCG
GATACCCTAAAGGAAGAATTGTAGAAATTTACGGACCAGAAAGTTCTGGTAAAACAACAGTTGCATTGCATGCGATTGCT
GAAGTACAAAAACAAGGCGGCATTGCAGCATTTATTGATGCTGAGCACGCGTTAGATCCTGTATATGCAGAAGCATTAGG
TGTAGATATCAATAACTTATACCTTTCACAACCTGACCATGGGGAACAAGGTTTAGAAATTGCAGAAGCATTTGTGCGTA
GTGGTGCAGTAGACATTATTGTTGTCGACTCAGTTGCAGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACACGTTGGTTTACAAGCTCGTTTAATGTCACAAGCTTTACGTAAACTTTCAGGTGCTATTTCTAAATCAAACTGTAC
AGCGATTTTCATCAACCAAATCCGTGAAAAAGTCGGCGTAATGTTCGGTAACCCTGAAACAACGCCAGGTGGACGTGCAT
TGAAGTTCTACAGCTCAGTACGTTTAGAAGTACGTCGTGCAGAACAATTAAAACAAGGCCAAGAAATTGTAGGTAACCGT
ACTAAAATTAAAGTAGTTAAAAACAAAGTTGCGCCACCATTCAGAGTAGCAGAAGTTGATATTATGTACGGACAAGGTAT
TTCTAAAGAAGGCGAATTAATCGACTTAGGTGTTGAACATGATATCGTTGATAAATCAGGTGCTTGGTATTCTTACAATG
GCGACCGTATGGGTCAAGGTAAAGAAAACGTTAAGAATTACTTGAAAGAACATCCTGATGTTAAAGCAGACATCGATCAA
AAATTACGTCAAAAACTTGGTATTTTTGATGGAGATGTTGAAGAGAAAGAAGAAAAAGAAGCAGAAAAAAATAGTGAAAA
TGCATCTTTATTTGAAGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.767

92.09

0.698
  recA Latilactobacillus sakei subsp. sakei 23K

72.561

92.655

0.672
  recA Streptococcus mitis SK321

63.714

98.87

0.63
  recA Streptococcus mutans UA159

63.714

98.87

0.63
  recA Streptococcus pneumoniae D39

64.08

98.305

0.63
  recA Streptococcus pneumoniae TIGR4

64.08

98.305

0.63
  recA Streptococcus pneumoniae R6

64.08

98.305

0.63
  recA Streptococcus pneumoniae Rx1

64.08

98.305

0.63
  recA Streptococcus pyogenes NZ131

67.069

93.503

0.627
  recA Streptococcus mitis NCTC 12261

63.143

98.87

0.624
  recA Lactococcus lactis subsp. cremoris KW2

66.767

93.503

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.5

97.175

0.607
  recA Vibrio cholerae strain A1552

65.644

92.09

0.605
  recA Acinetobacter baylyi ADP1

65.644

92.09

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.644

92.09

0.605
  recA Neisseria gonorrhoeae MS11

64.134

92.938

0.596
  recA Neisseria gonorrhoeae MS11

64.134

92.938

0.596
  recA Neisseria gonorrhoeae strain FA1090

64.134

92.938

0.596
  recA Acinetobacter baumannii D1279779

64.724

92.09

0.596
  recA Ralstonia pseudosolanacearum GMI1000

65.815

88.418

0.582
  recA Helicobacter pylori 26695

62.805

92.655

0.582
  recA Helicobacter pylori strain NCTC11637

62.5

92.655

0.579
  recA Glaesserella parasuis strain SC1401

58.12

99.153

0.576
  recA Pseudomonas stutzeri DSM 10701

62.27

92.09

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

93.503

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.688

90.395

0.54

Multiple sequence alignment