Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MORIYA_RS11770 Genome accession   NZ_LS483250
Coordinates   2531869..2532942 (-) Length   357 a.a.
NCBI ID   WP_197713382.1    Uniprot ID   -
Organism   Moritella yayanosii strain DB21MT 5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2526869..2537942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MORIYA_RS11745 (MORIYA_2511) - 2527619..2528410 (+) 792 WP_112715394.1 inner membrane protein YpjD -
  MORIYA_RS11750 (MORIYA_2512) - 2528481..2529773 (+) 1293 WP_112715396.1 HlyC/CorC family transporter -
  MORIYA_RS11755 (MORIYA_2513) - 2529874..2530158 (-) 285 WP_006033752.1 HU family DNA-binding protein -
  MORIYA_RS11760 (MORIYA_2515) - 2530403..2530987 (-) 585 WP_112715398.1 YjaG family protein -
  MORIYA_RS11765 (MORIYA_2517) - 2531409..2531669 (+) 261 WP_232011615.1 hypothetical protein -
  MORIYA_RS11770 (MORIYA_2519) recA 2531869..2532942 (-) 1074 WP_197713382.1 recombinase RecA Machinery gene
  MORIYA_RS11775 (MORIYA_2520) mutS 2533120..2535687 (+) 2568 WP_112715402.1 DNA mismatch repair protein MutS -
  MORIYA_RS11780 (MORIYA_2521) - 2535760..2536020 (-) 261 WP_112715404.1 hypothetical protein -
  MORIYA_RS11785 (MORIYA_2523) rpoS 2536363..2537322 (-) 960 WP_112715406.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38415.17 Da        Isoelectric Point: 5.3669

>NTDB_id=1135258 MORIYA_RS11770 WP_197713382.1 2531869..2532942(-) (recA) [Moritella yayanosii strain DB21MT 5]
MPQGNKMDANKEKALAAAIGQIEKQFGKGSIMKLGDNRTMDVETVSTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTL
TLEVIASAQREGKVCAFIDAEHALDPLYAGKLGVDVNELLISQPDTGEQALEITDMLARSGAVDIIVIDSVAALTPKAEI
EGSMGDNHMGLQARMLSQAMRKLTGNLKTSNTMCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGD
EITGNETRVKVVKNKIAAPFKQAEFQILYGKGFNRNGELVDLGVKEKLIEKAGAWYSYKGDKIGQGKAKASQYLADNPKI
AAEIDGMIRANLLGDKDEEVAEVKTPEIKTPEVEKEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=1135258 MORIYA_RS11770 WP_197713382.1 2531869..2532942(-) (recA) [Moritella yayanosii strain DB21MT 5]
ATGCCTCAGGGGAATAAAATGGACGCGAATAAAGAAAAAGCCTTAGCTGCAGCAATTGGACAAATTGAAAAGCAATTTGG
TAAAGGTTCTATCATGAAGCTAGGTGATAACCGTACCATGGACGTAGAAACTGTTTCTACAGGTTCACTTTCTCTTGATA
TTGCGCTGGGTGTTGGTGGCTTACCGATGGGGCGTATCGTTGAAATTTATGGTCCGGAATCAAGTGGTAAAACGACATTA
ACGTTAGAAGTGATTGCGTCTGCACAACGTGAAGGTAAAGTTTGCGCGTTTATTGATGCTGAGCATGCACTGGATCCTCT
CTATGCGGGTAAACTGGGTGTTGATGTGAATGAACTATTGATATCGCAACCAGATACCGGTGAACAAGCTCTCGAGATTA
CTGACATGTTAGCACGCTCAGGTGCAGTCGATATTATCGTGATTGACTCGGTTGCGGCATTGACACCAAAAGCTGAGATT
GAAGGCAGCATGGGCGATAACCACATGGGTCTGCAAGCGCGAATGTTGTCGCAAGCGATGCGTAAATTAACGGGTAACTT
AAAAACGAGCAACACTATGTGTATCTTCATTAACCAGATCCGTATGAAGATTGGTGTGATGTTTGGTTCACCAGAAACCA
CCACAGGTGGTAACGCCCTTAAATTTTACGCGTCAGTACGTTTAGATATCCGTCGTATTGGTTCGGTTAAAGATGGCGAC
GAGATCACGGGTAATGAAACACGTGTTAAAGTGGTTAAAAACAAGATTGCAGCACCGTTTAAACAAGCTGAATTTCAAAT
ACTATACGGCAAAGGCTTCAACCGTAATGGTGAGCTAGTTGATTTAGGTGTTAAAGAAAAACTCATTGAAAAAGCTGGCG
CTTGGTACTCATACAAGGGAGACAAGATTGGTCAAGGTAAAGCGAAAGCATCACAGTACCTTGCTGATAATCCGAAGATT
GCTGCAGAAATTGACGGTATGATCCGTGCTAATCTACTGGGTGATAAAGACGAAGAAGTGGCTGAAGTTAAGACTCCTGA
AATTAAGACTCCTGAAGTTGAAAAAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.651

91.597

0.748
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.651

91.597

0.748
  recA Pseudomonas stutzeri DSM 10701

74.924

91.597

0.686
  recA Acinetobacter baylyi ADP1

72.537

93.838

0.681
  recA Acinetobacter baumannii D1279779

73.7

91.597

0.675
  recA Glaesserella parasuis strain SC1401

70.186

90.196

0.633
  recA Neisseria gonorrhoeae MS11

69.231

91.036

0.63
  recA Neisseria gonorrhoeae MS11

69.231

91.036

0.63
  recA Neisseria gonorrhoeae strain FA1090

69.231

91.036

0.63
  recA Ralstonia pseudosolanacearum GMI1000

71.061

87.115

0.619
  recA Streptococcus pneumoniae Rx1

58.31

99.44

0.58
  recA Streptococcus pneumoniae TIGR4

58.31

99.44

0.58
  recA Streptococcus pneumoniae R6

58.31

99.44

0.58
  recA Streptococcus pneumoniae D39

58.31

99.44

0.58
  recA Streptococcus mitis NCTC 12261

58.96

96.919

0.571
  recA Streptococcus mitis SK321

58.79

97.199

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.468

91.597

0.563
  recA Lactococcus lactis subsp. cremoris KW2

58.48

95.798

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

90.476

0.552
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.878

92.157

0.552
  recA Helicobacter pylori 26695

59.633

91.597

0.546
  recA Bacillus subtilis subsp. subtilis str. 168

60.062

90.476

0.543
  recA Helicobacter pylori strain NCTC11637

59.327

91.597

0.543
  recA Streptococcus pyogenes NZ131

58.308

92.717

0.541
  recA Streptococcus mutans UA159

58.537

91.877

0.538
  recA Latilactobacillus sakei subsp. sakei 23K

59.062

89.636

0.529

Multiple sequence alignment