Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JMW03_RS05735 Genome accession   NZ_LR890349
Coordinates   1196439..1197500 (+) Length   353 a.a.
NCBI ID   WP_146708335.1    Uniprot ID   -
Organism   Escherichia coli strain MSB1_9D isolate MSB1_9D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1191439..1202500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW03_RS05705 srlD 1191692..1192471 (-) 780 WP_001077358.1 sorbitol-6-phosphate dehydrogenase -
  JMW03_RS05710 srlB 1192475..1192846 (-) 372 WP_000216194.1 PTS glucitol/sorbitol transporter subunit IIA -
  JMW03_RS05715 srlE 1192857..1193816 (-) 960 WP_000148875.1 PTS glucitol/sorbitol transporter subunit IIB -
  JMW03_RS05720 srlA 1193813..1194376 (-) 564 WP_000573321.1 PTS glucitol/sorbitol transporter subunit IIC -
  JMW03_RS05725 mltB 1194632..1195717 (+) 1086 WP_001295177.1 lytic murein transglycosylase B -
  JMW03_RS05730 pncC 1195862..1196359 (+) 498 WP_000132231.1 nicotinamide-nucleotide amidase -
  JMW03_RS05735 recA 1196439..1197500 (+) 1062 WP_146708335.1 recombinase RecA Machinery gene
  JMW03_RS05740 recX 1197569..1198069 (+) 501 WP_000140508.1 recombination regulator RecX -
  JMW03_RS05745 alaS 1198197..1200827 (+) 2631 WP_000047170.1 alanine--tRNA ligase -
  JMW03_RS05750 csrA 1201062..1201247 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37972.43 Da        Isoelectric Point: 4.9695

>NTDB_id=1133668 JMW03_RS05735 WP_146708335.1 1196439..1197500(+) (recA) [Escherichia coli strain MSB1_9D isolate MSB1_9D]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1133668 JMW03_RS05735 WP_146708335.1 1196439..1197500(+) (recA) [Escherichia coli strain MSB1_9D isolate MSB1_9D]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTAAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.988

93.768

0.788
  recA Vibrio cholerae strain A1552

83.988

93.768

0.788
  recA Pseudomonas stutzeri DSM 10701

74.184

95.467

0.708
  recA Acinetobacter baumannii D1279779

74.085

92.918

0.688
  recA Acinetobacter baylyi ADP1

73.78

92.918

0.686
  recA Glaesserella parasuis strain SC1401

69.452

98.3

0.683
  recA Neisseria gonorrhoeae MS11

69.018

92.351

0.637
  recA Neisseria gonorrhoeae MS11

69.018

92.351

0.637
  recA Neisseria gonorrhoeae strain FA1090

69.018

92.351

0.637
  recA Ralstonia pseudosolanacearum GMI1000

70.159

89.235

0.626
  recA Streptococcus mitis SK321

60

99.15

0.595
  recA Streptococcus mitis NCTC 12261

60

99.15

0.595
  recA Helicobacter pylori strain NCTC11637

61.721

95.467

0.589
  recA Helicobacter pylori 26695

61.424

95.467

0.586
  recA Streptococcus pneumoniae TIGR4

63.158

91.501

0.578
  recA Streptococcus pneumoniae Rx1

63.158

91.501

0.578
  recA Streptococcus pneumoniae D39

63.158

91.501

0.578
  recA Streptococcus pneumoniae R6

63.158

91.501

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.654

91.785

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.661

94.334

0.572
  recA Streptococcus mutans UA159

62.154

92.068

0.572
  recA Streptococcus pyogenes NZ131

61.846

92.068

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.935

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

92.068

0.567
  recA Lactococcus lactis subsp. cremoris KW2

61.3

91.501

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

90.935

0.555

Multiple sequence alignment