Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NMG72_RS05695 Genome accession   NZ_LR882938
Coordinates   1322931..1324019 (+) Length   362 a.a.
NCBI ID   WP_026797022.1    Uniprot ID   -
Organism   Planktothrix agardhii strain No.2A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1317931..1329019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG72_RS05670 (NO2A_01129) - 1318479..1318844 (-) 366 WP_042156298.1 hypothetical protein -
  NMG72_RS05675 (NO2A_01130) tilS 1318930..1319946 (-) 1017 WP_042157887.1 tRNA lysidine(34) synthetase TilS -
  NMG72_RS05680 (NO2A_01131) - 1320179..1320697 (-) 519 WP_227351236.1 hypothetical protein -
  NMG72_RS05685 (NO2A_01132) - 1320864..1321856 (+) 993 WP_026797019.1 aspartate carbamoyltransferase catalytic subunit -
  NMG72_RS05690 (NO2A_01133) - 1322097..1322693 (-) 597 WP_042156304.1 pseudouridine synthase -
  NMG72_RS05695 (NO2A_01134) recA 1322931..1324019 (+) 1089 WP_026797022.1 recombinase RecA Machinery gene
  NMG72_RS05700 (NO2A_01135) rnc 1324082..1324780 (-) 699 WP_042156307.1 ribonuclease III -
  NMG72_RS05705 (NO2A_01136) - 1324917..1325639 (-) 723 WP_227351238.1 NYN domain-containing protein -
  NMG72_RS05710 (NO2A_01137) - 1326375..1326632 (-) 258 WP_036833253.1 KGG domain-containing protein -
  NMG72_RS05715 (NO2A_01138) - 1326845..1327204 (-) 360 WP_227351239.1 hypothetical protein -
  NMG72_RS05720 (NO2A_01139) trmD 1327206..1327910 (-) 705 WP_227398093.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38713.12 Da        Isoelectric Point: 5.1804

>NTDB_id=1132880 NMG72_RS05695 WP_026797022.1 1322931..1324019(+) (recA) [Planktothrix agardhii strain No.2A]
MAKDTKDNSSSEKKKALTLVLNQIEKSFGKGAIVRLGDSTRMKVETIPSGALTLDLALGGGLPKGRVIEIYGPESSGKTT
LALHAIAEVQKAGGVAAFVDAEHALDPSYAAVLGVDTENLLVSQPDTGEMGLEVVDQLVRSVAVDIIVIDSVAALVPRAE
IEGDMGDSHMGLQARLMSQALRKITGNIGKSNCTVIFLNQLRQKIGVVYGNPETTTGGNALKFYASVRLDIRRIQTLKRG
TDEYGIRAKVKVAKNKIAPPFRIAEFDIIFGKGISTLGCLIDLAEETGVLKRKGAWYSYNGDNIGQGRDKTLIYLEENAT
LAKEIEQKVRGALDSGAVVSANSVIQVDSHDDEDIDASSEEE

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=1132880 NMG72_RS05695 WP_026797022.1 1322931..1324019(+) (recA) [Planktothrix agardhii strain No.2A]
ATGGCTAAAGATACTAAAGATAATTCTAGTTCTGAAAAGAAAAAAGCTCTAACCCTTGTTTTAAACCAAATTGAGAAAAG
CTTTGGCAAAGGGGCCATTGTTCGGTTAGGGGATTCCACCCGCATGAAAGTGGAAACCATTCCCAGTGGTGCATTAACCC
TAGACCTAGCCTTGGGGGGCGGTTTACCCAAGGGACGGGTAATTGAAATCTATGGGCCAGAAAGTTCGGGTAAAACCACC
TTAGCCCTCCACGCAATCGCCGAAGTCCAAAAAGCCGGAGGAGTAGCCGCCTTTGTCGATGCCGAACACGCCCTAGATCC
CAGCTATGCGGCTGTCCTAGGGGTGGATACGGAAAATTTACTGGTTTCTCAACCGGACACCGGAGAAATGGGCTTAGAGG
TGGTGGATCAACTGGTACGGTCTGTGGCCGTTGATATTATTGTAATTGACTCCGTGGCTGCCCTAGTTCCCCGGGCTGAA
ATTGAGGGGGACATGGGGGACTCCCACATGGGTTTACAAGCTCGGTTAATGAGTCAGGCGTTACGCAAAATTACGGGAAA
TATTGGTAAGTCGAATTGTACTGTTATTTTCCTCAACCAATTACGTCAAAAAATTGGTGTTGTCTATGGAAACCCCGAAA
CTACAACCGGGGGGAATGCCTTAAAATTCTATGCCTCTGTACGTTTAGATATTCGTCGAATTCAAACCTTAAAACGGGGA
ACGGATGAATACGGAATTAGGGCTAAAGTTAAGGTAGCTAAAAATAAAATTGCCCCTCCTTTCCGTATTGCAGAATTTGA
TATTATTTTTGGAAAAGGCATTTCTACTTTAGGTTGTTTAATTGATTTAGCCGAAGAAACCGGGGTATTAAAACGCAAAG
GAGCTTGGTATAGTTACAACGGCGATAATATTGGTCAGGGACGGGATAAAACCCTGATTTATTTAGAAGAAAATGCCACC
TTAGCTAAAGAAATTGAACAGAAAGTTAGAGGGGCTTTAGATAGTGGGGCTGTGGTTTCAGCTAATTCTGTCATCCAGGT
AGATAGCCATGATGATGAGGATATTGATGCCAGTTCAGAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

58.108

100

0.594
  recA Acinetobacter baumannii D1279779

62.209

95.028

0.591
  recA Pseudomonas stutzeri DSM 10701

61.739

95.304

0.588
  recA Acinetobacter baylyi ADP1

65.839

88.95

0.586
  recA Ralstonia pseudosolanacearum GMI1000

64

89.779

0.575
  recA Helicobacter pylori 26695

62.27

90.055

0.561
  recA Helicobacter pylori strain NCTC11637

62.27

90.055

0.561
  recA Neisseria gonorrhoeae strain FA1090

62.539

89.227

0.558
  recA Neisseria gonorrhoeae MS11

62.539

89.227

0.558
  recA Neisseria gonorrhoeae MS11

62.539

89.227

0.558
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.601

94.751

0.555
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.118

93.923

0.555
  recA Bacillus subtilis subsp. subtilis str. 168

60.542

91.713

0.555
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

88.95

0.55
  recA Vibrio cholerae strain A1552

61.801

88.95

0.55
  recA Streptococcus pyogenes NZ131

54.098

100

0.547
  recA Streptococcus mitis SK321

55.807

97.514

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

58.559

91.989

0.539
  recA Streptococcus mitis NCTC 12261

55.241

97.514

0.539
  recA Streptococcus pneumoniae D39

54.728

96.409

0.528
  recA Streptococcus pneumoniae Rx1

54.728

96.409

0.528
  recA Streptococcus pneumoniae R6

54.728

96.409

0.528
  recA Streptococcus pneumoniae TIGR4

54.728

96.409

0.528
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.685

94.751

0.528
  recA Streptococcus mutans UA159

58.462

89.779

0.525
  recA Lactococcus lactis subsp. cremoris KW2

56.587

92.265

0.522

Multiple sequence alignment