Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ENTER_RS16915 Genome accession   NZ_LR881936
Coordinates   3594993..3596051 (-) Length   352 a.a.
NCBI ID   WP_042321788.1    Uniprot ID   A0AAP8NVQ3
Organism   Enterobacter cancerogenus strain UPC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3589993..3601051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENTER_RS16900 (ENTER_3432) csrA 3591237..3591422 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  ENTER_RS16905 (ENTER_3433) alaS 3591664..3594291 (-) 2628 WP_006178159.1 alanine--tRNA ligase -
  ENTER_RS16910 (ENTER_3435) recX 3594423..3594923 (-) 501 WP_006178160.1 recombination regulator RecX -
  ENTER_RS16915 (ENTER_3436) recA 3594993..3596051 (-) 1059 WP_042321788.1 recombinase RecA Machinery gene
  ENTER_RS16920 (ENTER_3437) pncC 3596141..3596638 (-) 498 WP_006178162.1 nicotinamide-nucleotide amidase -
  ENTER_RS16925 (ENTER_3438) - 3596769..3597647 (-) 879 WP_042321791.1 metal ABC transporter substrate-binding protein -
  ENTER_RS16930 (ENTER_3439) - 3597647..3598522 (-) 876 WP_058608499.1 metal ABC transporter permease -
  ENTER_RS16935 (ENTER_3440) - 3598519..3599172 (-) 654 WP_058608500.1 metal ABC transporter ATP-binding protein -
  ENTER_RS16940 (ENTER_3441) mltB 3599429..3600529 (-) 1101 WP_202561040.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37840.23 Da        Isoelectric Point: 4.8057

>NTDB_id=1132668 ENTER_RS16915 WP_042321788.1 3594993..3596051(-) (recA) [Enterobacter cancerogenus strain UPC1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKDNPAAAKEI
EKKVRELLLNNQDSKPDFVVDAADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1132668 ENTER_RS16915 WP_042321788.1 3594993..3596051(-) (recA) [Enterobacter cancerogenus strain UPC1]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACCGGTTCGCTTTCTCTGGATATCGCACTGGGCG
CGGGCGGTTTGCCGATGGGCCGTATCGTAGAAATCTACGGGCCGGAATCCTCAGGTAAAACCACGCTGACCCTGCAGGTC
GTTGCGGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTTGACCCCGTCTACGCACGTAA
GCTGGGTGTTGATATCGACAACCTGCTGTGTTCTCAGCCGGACACCGGCGAGCAAGCGCTGGAAATTTGTGACGCGCTGG
CACGTTCTGGTGCGGTTGACGTTATCGTGGTTGACTCCGTTGCCGCGCTGACGCCAAAAGCCGAAATCGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCAGGTAACCTGAAACAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACCACTGGCGGTA
ACGCGCTGAAATTCTACGCGTCTGTGCGTCTTGATATCCGCCGTATTGGCGCGGTGAAAGACGGTGAGAACGTGGTGGGT
AGTGAAACCCGCGTGAAGGTTGTGAAGAACAAGATCGCAGCACCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAGAAAGCGGGTGCCTGGTACAGCT
ACAACGGCGATAAAATTGGTCAGGGTAAAGCCAATGCCATTTCCTGGCTGAAAGATAACCCGGCCGCGGCGAAAGAGATC
GAGAAAAAGGTGCGTGAGCTTCTGCTGAACAACCAGGACTCCAAACCGGATTTCGTGGTTGATGCTGCAGATGCTGAAGA
AACCAACGAAGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

94.034

0.793
  recA Vibrio cholerae strain A1552

84.29

94.034

0.793
  recA Pseudomonas stutzeri DSM 10701

71.965

98.295

0.707
  recA Acinetobacter baumannii D1279779

69.914

99.148

0.693
  recA Acinetobacter baylyi ADP1

73.476

93.182

0.685
  recA Glaesserella parasuis strain SC1401

68.786

98.295

0.676
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Helicobacter pylori strain NCTC11637

61.128

95.739

0.585
  recA Helicobacter pylori 26695

60.831

95.739

0.582
  recA Streptococcus mitis SK321

63.158

91.761

0.58
  recA Streptococcus mitis NCTC 12261

63.158

91.761

0.58
  recA Streptococcus pyogenes NZ131

62.462

92.33

0.577
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Streptococcus mutans UA159

62.154

92.33

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.36

94.602

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

92.33

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.42

92.045

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

91.193

0.565
  recA Lactococcus lactis subsp. cremoris KW2

61.61

91.761

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557

Multiple sequence alignment