Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L1X59_RS18540 Genome accession   NZ_LR813086
Coordinates   3917611..3918723 (+) Length   370 a.a.
NCBI ID   WP_183302623.1    Uniprot ID   -
Organism   Comamonas aquatica isolate BB1454     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3912611..3923723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1X59_RS18520 (TML_03670) - 3913549..3914535 (+) 987 WP_234687228.1 LysR substrate-binding domain-containing protein -
  L1X59_RS18525 (TML_03671) - 3914558..3916030 (-) 1473 WP_234687229.1 sensor histidine kinase -
  L1X59_RS18530 (TML_03672) - 3916100..3916774 (-) 675 WP_042415966.1 response regulator -
  L1X59_RS18535 (TML_03673) - 3916967..3917470 (-) 504 WP_234687230.1 MarR family winged helix-turn-helix transcriptional regulator -
  L1X59_RS18540 (TML_03674) recA 3917611..3918723 (+) 1113 WP_183302623.1 recombinase RecA Machinery gene
  L1X59_RS18545 (TML_03675) recX 3918801..3919262 (+) 462 WP_234687231.1 recombination regulator RecX -
  L1X59_RS18550 (TML_03676) - 3919323..3920567 (-) 1245 WP_234687232.1 MgtC/SapB family protein -
  L1X59_RS18555 (TML_03677) yddG 3920655..3921581 (-) 927 WP_234687233.1 aromatic amino acid DMT transporter YddG -
  L1X59_RS18560 (TML_03678) argC 3921748..3922680 (-) 933 WP_234687234.1 N-acetyl-gamma-glutamyl-phosphate reductase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39154.94 Da        Isoelectric Point: 5.0958

>NTDB_id=1130416 L1X59_RS18540 WP_183302623.1 3917611..3918723(+) (recA) [Comamonas aquatica isolate BB1454]
MNAIARNTDANSEKAKALAAALAQIEKQFGKGTIMKLGEGEAVEDIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSG
KTTLTLQVVAEMQKLGGTCAFIDAEHALDTSYAQKLGVNLNEVLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALVP
KAEIEGEMGDQLPGLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDNAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMAVEAKLLEKSGAWYAYNGEKIGQGRDNAREFLKE
NAALAVEIENKVRESLGISLIPVAEGEAAAKPAKGKKADKAVADEDGVIG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1130416 L1X59_RS18540 WP_183302623.1 3917611..3918723(+) (recA) [Comamonas aquatica isolate BB1454]
ATGAACGCCATCGCCCGCAACACCGACGCCAACAGCGAAAAAGCCAAGGCCCTGGCCGCCGCCCTGGCCCAGATCGAAAA
GCAGTTTGGCAAGGGCACCATCATGAAGCTGGGCGAGGGCGAGGCCGTGGAGGACATCCAGGTTGTGTCCACCGGCTCGC
TGGGCCTGGACGTGGCTCTGGGCGTGGGCGGCCTGCCCCGCGGTCGTGTGATCGAGATCTACGGCCCCGAGTCGTCCGGC
AAGACCACGCTGACCCTGCAGGTCGTGGCCGAGATGCAGAAGCTGGGCGGCACCTGCGCCTTCATCGACGCCGAGCACGC
GCTGGACACCAGCTATGCCCAGAAGCTGGGCGTGAACCTGAACGAGGTGCTGATCAGCCAGCCCGACACCGGTGAGCAGG
CCCTGGAAATCGTCGACTCGCTGGTGCGCTCCGGCGCCGTGGACCTGATCGTCGTCGACTCGGTGGCCGCCCTGGTGCCC
AAGGCCGAAATCGAAGGCGAAATGGGCGACCAGTTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCT
GACCGCCACCATCAAGAAGACCAACTGCACGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCT
CGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATTCGCCGCACCGGCACCATC
AAGAAGGGCGACAACGCCATCGGCAACGAGACCAAGGTCAAGGTGGTGAAGAACAAGGTGTCGCCCCCGTTCAAGACGGC
CGAGTTTGACATCCTGTTCGGCGAAGGCATCAGCCGCGAGGGCGAGATCCTGGACATGGCCGTGGAAGCCAAGCTGCTGG
AAAAATCCGGCGCCTGGTATGCCTACAACGGCGAGAAGATCGGCCAGGGCCGTGACAACGCCCGCGAGTTCCTGAAGGAA
AACGCCGCGCTGGCCGTGGAAATCGAGAACAAGGTGCGCGAGAGCCTGGGCATCAGCCTGATCCCCGTGGCCGAGGGCGA
AGCCGCCGCCAAGCCCGCCAAGGGCAAGAAGGCCGACAAGGCCGTGGCCGATGAAGACGGCGTGATCGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

84.127

85.135

0.716
  recA Pseudomonas stutzeri DSM 10701

68.406

93.243

0.638
  recA Neisseria gonorrhoeae MS11

70.606

89.189

0.63
  recA Neisseria gonorrhoeae strain FA1090

70.606

89.189

0.63
  recA Neisseria gonorrhoeae MS11

70.606

89.189

0.63
  recA Glaesserella parasuis strain SC1401

71.296

87.568

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.667

91.622

0.611
  recA Acinetobacter baumannii D1279779

69.018

88.108

0.608
  recA Vibrio cholerae strain A1552

68.712

88.108

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.712

88.108

0.605
  recA Acinetobacter baylyi ADP1

68.712

88.108

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.261

88.919

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

88.378

0.576
  recA Helicobacter pylori strain NCTC11637

64.939

88.649

0.576
  recA Helicobacter pylori 26695

64.939

88.649

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

63.063

90

0.568
  recA Lactococcus lactis subsp. cremoris KW2

63.444

89.459

0.568
  recA Streptococcus mitis SK321

59.654

93.784

0.559
  recA Streptococcus pyogenes NZ131

62.31

88.919

0.554
  recA Streptococcus pneumoniae R6

61.329

89.459

0.549
  recA Streptococcus pneumoniae TIGR4

61.329

89.459

0.549
  recA Streptococcus pneumoniae Rx1

61.329

89.459

0.549
  recA Streptococcus pneumoniae D39

61.329

89.459

0.549
  recA Streptococcus mutans UA159

61.212

89.189

0.546
  recA Streptococcus mitis NCTC 12261

61.027

89.459

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.606

89.189

0.541

Multiple sequence alignment