Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L1Z78_RS26545 Genome accession   NZ_LR813084
Coordinates   5823972..5825072 (+) Length   366 a.a.
NCBI ID   WP_234639312.1    Uniprot ID   -
Organism   Delftia tsuruhatensis isolate BB1455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5818972..5830072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1Z78_RS26525 (TML_05270) - 5820046..5821041 (+) 996 WP_234639308.1 LysR substrate-binding domain-containing protein -
  L1Z78_RS26530 (TML_05271) - 5821013..5822464 (-) 1452 WP_234639309.1 sensor histidine kinase -
  L1Z78_RS26535 (TML_05272) - 5822550..5823224 (-) 675 WP_234639310.1 response regulator transcription factor -
  L1Z78_RS26540 (TML_05273) - 5823324..5823824 (-) 501 WP_234639311.1 MarR family winged helix-turn-helix transcriptional regulator -
  L1Z78_RS26545 (TML_05274) recA 5823972..5825072 (+) 1101 WP_234639312.1 recombinase RecA Machinery gene
  L1Z78_RS26550 (TML_05275) recX 5825184..5825645 (+) 462 WP_234639313.1 recombination regulator RecX -
  L1Z78_RS26555 (TML_05276) yddG 5825653..5826573 (-) 921 WP_234639314.1 aromatic amino acid DMT transporter YddG -
  L1Z78_RS26560 (TML_05277) - 5826594..5828471 (-) 1878 WP_234639315.1 hypothetical protein -
  L1Z78_RS26565 (TML_05278) argC 5828468..5829400 (-) 933 WP_234639316.1 N-acetyl-gamma-glutamyl-phosphate reductase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 38860.56 Da        Isoelectric Point: 5.3782

>NTDB_id=1130396 L1Z78_RS26545 WP_234639312.1 5823972..5825072(+) (recA) [Delftia tsuruhatensis isolate BB1455]
MNTAVTTANSEKAKALQAALAQIEKQFGKGTIMRLGEGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQVIAEMQKQGGTCAFIDAEHALDTGYAQKLGVNLSEVLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKA
EIEGEMGDQLPGLQARLMSQALRKLTSTIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKK
GDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILDKSGAWYAYNGEKIGQGRDNAREFLRENR
DLAVEIENKVRDSLGIALLPTAGGEAAAKPPKAGKAKADKDGVIEA

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=1130396 L1Z78_RS26545 WP_234639312.1 5823972..5825072(+) (recA) [Delftia tsuruhatensis isolate BB1455]
ATGAACACCGCCGTCACCACCGCCAACAGTGAAAAAGCCAAGGCCCTGCAGGCCGCGCTCGCACAGATCGAAAAGCAGTT
CGGCAAGGGCACCATCATGCGCCTGGGCGAAGGCGAGGCCATCGAGGACATCCAGGTCGTCTCCACCGGCTCGCTGGGCC
TGGACATCGCCCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGCCCTGAATCCTCGGGCAAGACC
ACGCTGACCCTGCAGGTCATCGCGGAAATGCAAAAGCAGGGCGGCACCTGCGCCTTCATCGACGCCGAACACGCGCTGGA
CACCGGTTATGCCCAGAAGCTCGGCGTGAACCTGAGCGAAGTGCTGATCAGTCAGCCCGACACCGGCGAGCAGGCCCTGG
AGATCGTGGACAGCCTGGTGCGCTCGGGCGCCGTGGACCTGATCGTCGTGGACTCGGTGGCGGCCCTCACGCCCAAGGCA
GAAATCGAAGGCGAGATGGGCGACCAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTGACCAG
CACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCG
AGACCACCACGGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACGGGCACCATCAAGAAG
GGCGACGAGGCCATCGGCAACGAGACCAAGGTCAAGGTCGTCAAGAACAAGGTCTCGCCCCCGTTCAAGACCGCCGAGTT
CGACATCCTGTTCGGCGAGGGCATCTCGCGCGAAGGCGAAATCCTGGACATGGGCGTCAACGCCAAGATCCTCGACAAGT
CGGGCGCCTGGTATGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAATGCCCGCGAGTTCCTGCGCGAGAACCGC
GATCTGGCCGTGGAGATCGAGAACAAGGTACGTGACAGCCTGGGCATCGCCCTGCTGCCCACGGCCGGCGGCGAAGCTGC
GGCCAAGCCCCCCAAGGCTGGCAAGGCCAAGGCCGACAAGGACGGCGTGATCGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.484

85.792

0.708
  recA Glaesserella parasuis strain SC1401

70.359

91.257

0.642
  recA Neisseria gonorrhoeae MS11

69.851

91.53

0.639
  recA Neisseria gonorrhoeae MS11

69.851

91.53

0.639
  recA Neisseria gonorrhoeae strain FA1090

69.851

91.53

0.639
  recA Pseudomonas stutzeri DSM 10701

71.166

89.071

0.634
  recA Acinetobacter baylyi ADP1

70.552

89.071

0.628
  recA Acinetobacter baumannii D1279779

70.245

89.071

0.626
  recA Vibrio cholerae strain A1552

69.939

89.071

0.623
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.939

89.071

0.623
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.062

92.077

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.173

89.891

0.604
  recA Helicobacter pylori strain NCTC11637

64.939

89.617

0.582
  recA Helicobacter pylori 26695

64.939

89.617

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

89.344

0.579
  recA Streptococcus mutans UA159

58.496

98.087

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

63.063

90.984

0.574
  recA Streptococcus mitis SK321

58.475

96.721

0.566
  recA Lactococcus lactis subsp. cremoris KW2

62.236

90.437

0.563
  recA Streptococcus pyogenes NZ131

61.702

89.891

0.555
  recA Streptococcus pneumoniae Rx1

60.725

90.437

0.549
  recA Streptococcus pneumoniae D39

60.725

90.437

0.549
  recA Streptococcus pneumoniae R6

60.725

90.437

0.549
  recA Streptococcus pneumoniae TIGR4

60.725

90.437

0.549
  recA Streptococcus mitis NCTC 12261

60.423

90.437

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

88.798

0.533

Multiple sequence alignment