Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BAMY6639_RS19240 Genome accession   NZ_CP006058
Coordinates   3945682..3946725 (+) Length   347 a.a.
NCBI ID   WP_060675476.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3940682..3951725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS19210 (BAMY6639_20120) ymfI 3940693..3941421 (+) 729 WP_061861470.1 elongation factor P 5-aminopentanone reductase -
  BAMY6639_RS19215 (BAMY6639_20125) - 3941496..3941753 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  BAMY6639_RS19220 (BAMY6639_20130) - 3941880..3942671 (+) 792 WP_007409819.1 DUF3388 domain-containing protein -
  BAMY6639_RS19225 (BAMY6639_20135) - 3942690..3943589 (+) 900 WP_014417801.1 helix-turn-helix domain-containing protein -
  BAMY6639_RS19230 (BAMY6639_20140) pgsA 3943662..3944243 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BAMY6639_RS19235 (BAMY6639_20145) cinA 3944261..3945511 (+) 1251 WP_060675475.1 competence/damage-inducible protein A Machinery gene
  BAMY6639_RS19240 (BAMY6639_20150) recA 3945682..3946725 (+) 1044 WP_060675476.1 recombinase RecA Machinery gene
  BAMY6639_RS19245 (BAMY6639_20160) - 3946893..3948065 (+) 1173 WP_061861471.1 serine hydrolase domain-containing protein -
  BAMY6639_RS19250 (BAMY6639_20165) rny 3948367..3949926 (+) 1560 WP_003154140.1 ribonuclease Y -
  BAMY6639_RS19255 (BAMY6639_20170) - 3949987..3950781 (+) 795 WP_003154137.1 TIGR00282 family metallophosphoesterase -
  BAMY6639_RS19260 (BAMY6639_20175) spoVS 3950981..3951241 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37931.13 Da        Isoelectric Point: 4.7494

>NTDB_id=113013 BAMY6639_RS19240 WP_060675476.1 3945682..3946725(+) (recA) [Bacillus amyloliquefaciens UMAF6639]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVTDKAEEVQEEMELEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=113013 BAMY6639_RS19240 WP_060675476.1 3945682..3946725(+) (recA) [Bacillus amyloliquefaciens UMAF6639]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAGCAAATAGAAAAACAATTCGGCAAAGGTTCCATCATGAAGCT
CGGAGAAAAAACGGATACAAGAATTTCAACGGTGCCAAGCGGTTCCCTTGCACTTGATACCGCTCTCGGAATAGGCGGAT
ACCCGCGCGGACGGATTATTGAAGTATACGGACCTGAAAGCTCAGGTAAAACGACTGTAGCGCTTCACGCAATCGCTGAG
GTTCAGGAAAAAGGCGGACAGGCAGCATTTATTGATGCTGAGCATGCTCTTGATCCTGTTTACGCGCAAAAGCTCGGTGT
CAATATCGAAGAGCTTCTGCTTTCTCAGCCGGATACGGGAGAGCAGGCGCTAGAGATTGCTGAAGCGCTGGTGCGAAGCG
GCGCTGTTGACATCGTAGTCGTTGACTCTGTTGCGGCGCTTGTTCCAAAAGCTGAAATTGAAGGTGACATGGGTGATTCA
CACGTCGGTTTACAGGCGCGTCTCATGTCTCAGGCGCTCCGTAAGCTTTCCGGCGCCATCAATAAATCTAAAACAATCGC
AATCTTTATTAACCAGATTCGTGAAAAAGTCGGCGTTATGTTCGGAAATCCGGAGACGACACCGGGCGGCCGCGCGCTGA
AATTCTATTCTTCCGTGCGCCTTGAAGTGCGCCGTGCCGAGCAATTAAAGCAGGGCAACGACGTGATGGGGAATAAAACG
AGAATTAAAGTCGTAAAAAACAAAGTCGCTCCTCCGTTCCGTACGGCTGAAGTGGACATTATGTACGGTGAAGGAATCTC
CAAAGAAGGGGAAATCATCGACCTTGGAACTGAACTGGATATCGTGCAAAAAAGCGGTTCGTGGTATTCTTATGAAGAAG
AACGCCTCGGTCAGGGCCGTGAAAACGCCAAGCAGTTCTTAAAAGAAAATAAAGACATCATGCTGATGATTCAGGAACAA
ATCCGTGAACATTACGGTTTAGACAATAACGGTGTAACGGACAAAGCGGAAGAAGTTCAGGAAGAGATGGAATTAGAAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

97.126

100

0.974
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

94.236

0.706
  recA Streptococcus mutans UA159

66.092

100

0.663
  recA Streptococcus pneumoniae D39

68.485

95.101

0.651
  recA Streptococcus mitis NCTC 12261

68.485

95.101

0.651
  recA Streptococcus pneumoniae Rx1

68.485

95.101

0.651
  recA Streptococcus pneumoniae R6

68.485

95.101

0.651
  recA Streptococcus pneumoniae TIGR4

68.485

95.101

0.651
  recA Streptococcus mitis SK321

68.182

95.101

0.648
  recA Streptococcus pyogenes NZ131

67.378

94.524

0.637
  recA Helicobacter pylori 26695

63.265

98.847

0.625
  recA Helicobacter pylori strain NCTC11637

63.265

98.847

0.625
  recA Lactococcus lactis subsp. cremoris KW2

65.455

95.101

0.622
  recA Neisseria gonorrhoeae strain FA1090

65.443

94.236

0.617
  recA Neisseria gonorrhoeae MS11

65.443

94.236

0.617
  recA Neisseria gonorrhoeae MS11

65.443

94.236

0.617
  recA Ralstonia pseudosolanacearum GMI1000

64.634

94.524

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.236

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

94.236

0.599
  recA Glaesserella parasuis strain SC1401

60.29

99.424

0.599
  recA Acinetobacter baylyi ADP1

59.71

99.424

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.507

0.594
  recA Vibrio cholerae strain A1552

64.174

92.507

0.594
  recA Pseudomonas stutzeri DSM 10701

63.125

92.219

0.582
  recA Acinetobacter baumannii D1279779

62.112

92.795

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

92.219

0.559

Multiple sequence alignment