Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MNU25_RS15275 Genome accession   NZ_LR746496
Coordinates   3419692..3420732 (-) Length   346 a.a.
NCBI ID   WP_240985853.1    Uniprot ID   A0A8S0WQA3
Organism   Acididesulfobacillus acetoxydans isolate PacBioINE     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3414692..3425732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNU25_RS15250 (DEACI_3164) spoVS 3415248..3415508 (-) 261 WP_006715678.1 stage V sporulation protein SpoVS -
  MNU25_RS15255 (DEACI_3165) - 3415671..3416450 (-) 780 WP_240985850.1 TIGR00282 family metallophosphoesterase -
  MNU25_RS15260 (DEACI_3166) - 3416569..3417096 (-) 528 WP_240985851.1 hypothetical protein -
  MNU25_RS15265 (DEACI_3167) rny 3417286..3418854 (-) 1569 WP_372503558.1 ribonuclease Y -
  MNU25_RS15270 (DEACI_3168) - 3419061..3419552 (-) 492 WP_240985852.1 regulatory protein RecX -
  MNU25_RS15275 (DEACI_3169) recA 3419692..3420732 (-) 1041 WP_240985853.1 recombinase RecA Machinery gene
  MNU25_RS15280 (DEACI_3170) - 3421105..3422700 (-) 1596 WP_240985854.1 DEAD/DEAH box helicase -
  MNU25_RS15285 (DEACI_3171) - 3422697..3423959 (-) 1263 WP_240985855.1 competence/damage-inducible protein A -
  MNU25_RS15290 (DEACI_3172) - 3424075..3425547 (-) 1473 WP_240985856.1 AAA family ATPase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 36944.14 Da        Isoelectric Point: 5.3179

>NTDB_id=1129873 MNU25_RS15275 WP_240985853.1 3419692..3420732(-) (recA) [Acididesulfobacillus acetoxydans isolate PacBioINE]
MSGTDKLKALDIALGQIEKQFGKGSIMKLGEASAKMAVETISTGALALDIALGVGGVPRGRVVEIYGPESSGKTTVALHI
AAEAQKAGGVAAFIDAEHALDPVYARALGLNIDDLLVAQPDTGEQALEICEALVRSGAVDVVVIDSVAALVPRAEIEGEM
GDSHVGLHARLMSQALRKLTGAISKSRTCVIFINQIREKVGVMFGNPETTTGGRALKFYATIRLDVRRQETLKQGQEMVG
SRTRVKVVKNKVAPPFRMADFDIMYGQGISREGSIVDVGTDMEIINKSGAWYSYNGERLGQGKENVKEFLRQHPEIANEI
EGRIRSNISSAVPASAEEEADPDNAD

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1129873 MNU25_RS15275 WP_240985853.1 3419692..3420732(-) (recA) [Acididesulfobacillus acetoxydans isolate PacBioINE]
ATGTCCGGAACTGACAAACTGAAAGCCCTTGATATCGCCTTGGGCCAAATTGAAAAGCAGTTTGGCAAAGGGTCCATTAT
GAAACTGGGCGAGGCTTCGGCGAAAATGGCGGTTGAGACGATCTCCACCGGTGCTCTGGCTCTGGACATTGCTTTAGGCG
TGGGCGGAGTGCCCCGGGGGAGGGTGGTGGAAATTTACGGACCCGAATCTTCGGGAAAAACCACCGTGGCCCTGCATATT
GCGGCGGAGGCACAAAAGGCAGGGGGCGTGGCCGCTTTTATCGATGCCGAACATGCTTTGGATCCGGTCTACGCGCGGGC
GCTCGGACTAAACATCGACGATCTCCTGGTGGCTCAACCGGACACGGGCGAACAGGCTCTGGAAATTTGCGAGGCCCTCG
TCCGGAGCGGAGCGGTGGACGTGGTTGTGATCGACTCGGTGGCCGCCCTCGTTCCGCGGGCCGAGATTGAAGGGGAAATG
GGGGATTCCCATGTCGGTTTGCATGCGCGGCTGATGTCCCAGGCGCTGCGCAAGCTGACGGGGGCCATCAGCAAGAGCCG
GACCTGCGTTATTTTTATTAACCAGATCCGGGAAAAGGTCGGAGTGATGTTCGGTAATCCCGAGACGACCACCGGCGGCC
GCGCCTTAAAATTCTACGCCACGATCCGACTGGACGTGCGCCGGCAGGAGACGCTCAAGCAAGGTCAGGAAATGGTGGGC
AGCCGCACACGGGTCAAGGTCGTCAAAAACAAAGTGGCCCCTCCCTTCAGGATGGCGGACTTCGATATCATGTACGGACA
GGGCATTTCCCGGGAGGGCAGTATCGTCGATGTCGGCACGGATATGGAGATTATCAACAAGTCGGGAGCCTGGTATTCCT
ACAACGGAGAGAGGTTGGGACAGGGCAAAGAGAATGTCAAGGAATTCCTGCGTCAACACCCGGAAATTGCCAATGAAATA
GAGGGACGGATCCGAAGCAACATCAGCAGTGCGGTTCCGGCTTCGGCAGAGGAGGAGGCGGACCCGGATAACGCAGACTG
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

70.679

93.642

0.662
  recA Latilactobacillus sakei subsp. sakei 23K

68.098

94.22

0.642
  recA Pseudomonas stutzeri DSM 10701

63.478

99.711

0.633
  recA Neisseria gonorrhoeae MS11

67.081

93.064

0.624
  recA Neisseria gonorrhoeae MS11

67.081

93.064

0.624
  recA Neisseria gonorrhoeae strain FA1090

67.081

93.064

0.624
  recA Glaesserella parasuis strain SC1401

63.529

98.266

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.978

92.775

0.621
  recA Vibrio cholerae strain A1552

66.978

92.775

0.621
  recA Acinetobacter baylyi ADP1

62.682

99.133

0.621
  recA Ralstonia pseudosolanacearum GMI1000

68.59

90.173

0.618
  recA Streptococcus pneumoniae TIGR4

64.545

95.376

0.616
  recA Streptococcus pneumoniae Rx1

64.545

95.376

0.616
  recA Streptococcus pneumoniae D39

64.545

95.376

0.616
  recA Streptococcus pneumoniae R6

64.545

95.376

0.616
  recA Streptococcus pyogenes NZ131

64.832

94.509

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

98.266

0.61
  recA Acinetobacter baumannii D1279779

61.696

98.844

0.61
  recA Streptococcus mitis NCTC 12261

64.526

94.509

0.61
  recA Streptococcus mutans UA159

64.526

94.509

0.61
  recA Streptococcus mitis SK321

64.22

94.509

0.607
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.077

93.931

0.592
  recA Lactococcus lactis subsp. cremoris KW2

62.195

94.798

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

95.665

0.584
  recA Helicobacter pylori strain NCTC11637

60.856

94.509

0.575
  recA Helicobacter pylori 26695

60.856

94.509

0.575

Multiple sequence alignment