Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FXZ76_RS04410 Genome accession   NZ_LR698997
Coordinates   1022596..1023669 (-) Length   357 a.a.
NCBI ID   WP_079535977.1    Uniprot ID   -
Organism   Phoenicibacter congonensis isolate MGYG-HGUT-02419     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1017596..1028669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXZ76_RS04390 miaA 1017819..1018745 (-) 927 WP_079536925.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  FXZ76_RS04395 miaB 1018774..1020138 (-) 1365 WP_079535969.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  FXZ76_RS04400 - 1020140..1020400 (-) 261 WP_172618941.1 stage V sporulation protein S -
  FXZ76_RS04405 rny 1020633..1022195 (-) 1563 WP_147571548.1 ribonuclease Y -
  FXZ76_RS04410 recA 1022596..1023669 (-) 1074 WP_079535977.1 recombinase RecA Machinery gene
  FXZ76_RS04415 pgsA 1023993..1025141 (-) 1149 WP_079535979.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FXZ76_RS04420 rimO 1025150..1026433 (-) 1284 WP_079535981.1 30S ribosomal protein S12 methylthiotransferase RimO -
  FXZ76_RS04425 - 1026449..1026946 (-) 498 WP_079535984.1 YajQ family cyclic di-GMP-binding protein -
  FXZ76_RS04430 - 1026989..1028170 (-) 1182 WP_079535986.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38333.71 Da        Isoelectric Point: 5.8902

>NTDB_id=1129073 FXZ76_RS04410 WP_079535977.1 1022596..1023669(-) (recA) [Phoenicibacter congonensis isolate MGYG-HGUT-02419]
MDSNKEELLRNTTEQIEKKFGKGSIMKLGDNVHLNVDAIPTGVLPLDIALGIGGVPKGRIVEIYGPESSGKTTLALQILS
EAQAQGGTVAFIDAEHAMDPIYAARLGVDIDNVLISQPDTGEQALEICDMLVHSGAVECIVVDSVAALVPRAEIEGEMGD
ATVGLQARLMSQALRKLTGSLSKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFSSVRIEIRRVESIKSDNEIIGNK
VRAKVVKNKVAPPFRKAEFDIIFGEGVSKASCVIDAGITCGVLNRSGAWFSYNDTRLGQGREASKAFLNSNPTMLREIES
NIRKSFNLPATDDESATSSTPKEKDKTAKTTGKSTES

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=1129073 FXZ76_RS04410 WP_079535977.1 1022596..1023669(-) (recA) [Phoenicibacter congonensis isolate MGYG-HGUT-02419]
ATGGATTCAAACAAAGAAGAACTTTTAAGAAACACAACAGAGCAAATAGAAAAGAAATTCGGCAAGGGTTCGATAATGAA
ATTGGGCGACAACGTTCACCTGAATGTTGACGCAATTCCGACTGGTGTTTTGCCCCTTGACATTGCTCTTGGAATCGGTG
GCGTGCCTAAAGGAAGAATTGTTGAGATTTATGGACCAGAGTCAAGTGGAAAAACAACGCTTGCATTACAAATTCTTTCT
GAAGCTCAAGCTCAAGGTGGAACTGTGGCTTTCATTGATGCAGAACACGCAATGGACCCAATATATGCCGCAAGACTTGG
CGTTGACATTGACAATGTTTTAATTTCTCAACCTGACACAGGCGAACAAGCGCTCGAAATTTGCGACATGTTAGTTCACT
CCGGTGCTGTCGAGTGCATTGTAGTTGATTCAGTGGCGGCACTTGTTCCACGAGCTGAAATTGAAGGCGAAATGGGAGAT
GCGACTGTTGGCCTGCAAGCACGACTAATGAGTCAGGCTTTAAGGAAATTAACAGGATCATTGTCTAAATCAAACACCAC
TTGCATTTTCATCAACCAATTAAGAGAAAAAATTGGAGTAATGTTTGGAAACCCTGAAACAACTACTGGCGGTCGAGCCT
TGAAGTTTTTCAGCAGCGTTCGCATAGAAATTCGACGAGTTGAGTCAATCAAAAGTGACAATGAGATAATTGGCAACAAA
GTTCGAGCTAAAGTGGTCAAAAACAAAGTTGCGCCTCCGTTCAGGAAAGCTGAATTTGACATTATTTTCGGTGAGGGTGT
GTCAAAGGCATCGTGTGTTATAGACGCCGGCATCACTTGCGGTGTTTTAAACAGAAGTGGAGCATGGTTTTCATACAACG
ACACAAGACTTGGACAGGGAAGAGAAGCATCAAAGGCTTTCTTAAACAGCAACCCGACAATGCTTCGAGAAATTGAGTCA
AACATCAGAAAATCCTTTAATCTTCCAGCAACAGATGATGAAAGTGCGACAAGTTCAACTCCAAAAGAAAAAGATAAAAC
AGCAAAGACAACAGGCAAGTCGACTGAATCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

59.13

96.639

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.27

91.317

0.569
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.398

92.157

0.566
  recA Pseudomonas stutzeri DSM 10701

58.261

96.639

0.563
  recA Ralstonia pseudosolanacearum GMI1000

63.578

87.675

0.557
  recA Helicobacter pylori 26695

60.856

91.597

0.557
  recA Helicobacter pylori strain NCTC11637

60.856

91.597

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

58.58

94.678

0.555
  recA Neisseria gonorrhoeae MS11

60.494

90.756

0.549
  recA Neisseria gonorrhoeae MS11

60.494

90.756

0.549
  recA Neisseria gonorrhoeae strain FA1090

60.494

90.756

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.036

92.997

0.549
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.574

92.157

0.549
  recA Vibrio cholerae strain A1552

59.574

92.157

0.549
  recA Streptococcus mutans UA159

55.301

97.759

0.541
  recA Acinetobacter baumannii D1279779

59.202

91.317

0.541
  recA Glaesserella parasuis strain SC1401

59.627

90.196

0.538
  recA Streptococcus mitis SK321

54.545

98.599

0.538
  recA Streptococcus pneumoniae D39

53.846

98.319

0.529
  recA Streptococcus pneumoniae Rx1

53.846

98.319

0.529
  recA Streptococcus pneumoniae R6

53.846

98.319

0.529
  recA Streptococcus pneumoniae TIGR4

53.846

98.319

0.529
  recA Streptococcus mitis NCTC 12261

56.061

92.437

0.518
  recA Lactococcus lactis subsp. cremoris KW2

55.152

92.437

0.51
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.576

86.555

0.507
  recA Streptococcus pyogenes NZ131

55.521

91.317

0.507

Multiple sequence alignment