Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E5P1_RS14560 Genome accession   NZ_LR594689
Coordinates   2973554..2974621 (+) Length   355 a.a.
NCBI ID   WP_068679350.1    Uniprot ID   -
Organism   Variovorax sp. WDL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2968554..2979621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5P1_RS14530 (G3W93_RS14545) - 2969168..2969713 (+) 546 WP_068679338.1 SET domain-containing protein-lysine N-methyltransferase -
  E5P1_RS14535 (G3W93_RS14550) - 2969716..2970510 (+) 795 WP_068679340.1 biotin--[acetyl-CoA-carboxylase] ligase -
  E5P1_RS14540 (G3W93_RS14555) - 2970513..2970716 (+) 204 WP_068679342.1 sporulation protein -
  E5P1_RS14545 (G3W93_RS14560) - 2970713..2972161 (-) 1449 WP_068679344.1 sensor histidine kinase N-terminal domain-containing protein -
  E5P1_RS14550 (G3W93_RS14565) - 2972187..2972858 (-) 672 WP_068679346.1 response regulator transcription factor -
  E5P1_RS14555 (G3W93_RS14570) - 2972919..2973404 (-) 486 WP_068679348.1 MarR family transcriptional regulator -
  E5P1_RS14560 (G3W93_RS14575) recA 2973554..2974621 (+) 1068 WP_068679350.1 recombinase RecA Machinery gene
  E5P1_RS14565 (G3W93_RS14580) recX 2974631..2975080 (+) 450 WP_068679352.1 recombination regulator RecX -
  E5P1_RS14570 (G3W93_RS14585) argC 2975099..2976028 (-) 930 WP_102905016.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  E5P1_RS14575 (G3W93_RS14590) sucC 2976220..2977386 (+) 1167 WP_068679354.1 ADP-forming succinate--CoA ligase subunit beta -
  E5P1_RS14580 (G3W93_RS14595) sucD 2977396..2978289 (+) 894 WP_068679356.1 succinate--CoA ligase subunit alpha -
  E5P1_RS14585 (G3W93_RS14600) - 2978490..2979299 (+) 810 WP_068679358.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37704.30 Da        Isoelectric Point: 5.0512

>NTDB_id=1128267 E5P1_RS14560 WP_068679350.1 2973554..2974621(+) (recA) [Variovorax sp. WDL1]
MDALVKGSSISVAGSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAQMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVAAKIVDKSGAWYAYNGEKIGQGRDNAREF
LRENPTLSREIENKVRESLGIPLLPEDAGEGASGA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1128267 E5P1_RS14560 WP_068679350.1 2973554..2974621(+) (recA) [Variovorax sp. WDL1]
ATGGACGCACTCGTCAAAGGCAGCAGCATCTCGGTCGCAGGCAGCGAAAAGGCCAAGGCCCTCCAGGCCGCCCTGGCCCA
GATCGAGAAGCAATTCGGCAAGGGCACCATCATGCGGCTTGGCGAAGGCGAGGCGCTGGAGGACATCCAGGTGGTTTCCA
CCGGCTCGCTGGGCCTGGATATCGCCCTGGGGGTCGGTGGCCTGCCGCGCGGCCGTGTGATCGAGATCTACGGCCCGGAA
TCCTCCGGCAAGACCACGCTCACGCTGCAGGTCATCGCCCAGATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGATGC
CGAGCATGCGCTGGACGTTCAGTACGCGCAGAAGCTGGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAGCAGGCCCTGGAAATCGTCGACTCGCTGGTGCGCTCGGGCGCGGTCGACCTGATCGTCGTCGACTCGGTGGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAGATGGGCGACTCGCTGCCCGGCCTGCAGGCGCGGCTCATGAGCCAGGCGCT
GCGCAAGCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAGACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCGATCGGCAACGAGACCAAGGTCAAGGTGGTGAAGAACAAGGTTTCGCCGCCCTT
CAAGACGGCCGAATTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGGCCGCCA
AGATCGTCGACAAGTCGGGTGCCTGGTACGCCTACAACGGCGAGAAGATCGGGCAGGGCCGGGACAACGCGCGCGAGTTC
CTGCGCGAGAACCCGACGCTCTCGCGCGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCATTCCGCTCCTGCCCGAGGA
CGCGGGCGAGGGCGCATCCGGGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.439

88.451

0.738
  recA Acinetobacter baylyi ADP1

73.065

90.986

0.665
  recA Neisseria gonorrhoeae MS11

71.646

92.394

0.662
  recA Neisseria gonorrhoeae MS11

71.646

92.394

0.662
  recA Neisseria gonorrhoeae strain FA1090

71.646

92.394

0.662
  recA Pseudomonas stutzeri DSM 10701

72.755

90.986

0.662
  recA Acinetobacter baumannii D1279779

72.446

90.986

0.659
  recA Glaesserella parasuis strain SC1401

71.341

92.394

0.659
  recA Vibrio cholerae strain A1552

69.789

93.239

0.651
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.789

93.239

0.651
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.405

91.831

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.261

92.676

0.614
  recA Helicobacter pylori 26695

65.951

91.831

0.606
  recA Helicobacter pylori strain NCTC11637

65.951

91.831

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

92.113

0.6
  recA Streptococcus mutans UA159

61.29

96.056

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

61.905

94.648

0.586
  recA Streptococcus pyogenes NZ131

62.236

93.239

0.58
  recA Streptococcus pneumoniae Rx1

61.446

93.521

0.575
  recA Streptococcus pneumoniae D39

61.446

93.521

0.575
  recA Streptococcus pneumoniae R6

61.446

93.521

0.575
  recA Streptococcus pneumoniae TIGR4

61.446

93.521

0.575
  recA Lactococcus lactis subsp. cremoris KW2

61.145

93.521

0.572
  recA Streptococcus mitis SK321

61.145

93.521

0.572
  recA Streptococcus mitis NCTC 12261

61.145

93.521

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.423

0.555

Multiple sequence alignment